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  • SDTM datasets of clinical data and measurements for selected cancer collections to TCIA (DI-Cubed-Reports)

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Description

The Data Integration & Imaging Informatics (DI-Cubed) project explored the issue of lack of standardized data capture at the point of data creation, as reflected in the non-image data accompanying 4 TCIA breast cancer collections (ISPY1BREAST-DIAGNOSISBreast-MRI-NACT-Pilot, TCGA-BRCA) and the Ivy Glioblastoma Atlas Project (Ivy GAP) brain cancer collection. The work addressed the desire for semantic interoperability between various NCI initiatives by aligning on common clinical metadata elements and supporting use cases that connect clinical, imaging, and genomics data. Accordingly, clinical and measurement data imported into I2B2 were cross-mapped to industry standard concepts for names and values including those derived from BRIDG, CDISC SDTM, DICOM Structured Reporting models and using NCI Thesaurus, SNOMED CT and LOINC controlled terminology. 

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Localtab Group



Localtab
activetrue
titleData Access

Data Access



Data TypeDownload all or Query/Filter
SAS Transport Files (XPT)

Image Analysis (CSV)


Note:   Please contact help@cancerimagingarchive.net  with any questions regarding usage.

Collections Used in this Third Party Analysis
Below is a list of the Collections used in these analyses:




Localtab
titleDetailed Description

Detailed Description

TCIA breast cancer collections used:

TCIA brain cancer collection used:




Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

Public collection license

Info
titleData Citation

Hickman H., Ver Hoef W., Hastak S., Neville J., Clunie D., Wagner U., Helton E. (2019). SDTM datasets of clinical data and measurements for selected cancer collections to TCIA [Dataset]. The Cancer Imaging Archive. doi: 10.7937/TCIA.2019.zfv154m9


Info
titleTCIA Citation

Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F.  The (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, . Journal of Digital Imaging, Volume 26, Number (6, December, 2013, pp 1045-1057. DOI: ), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7


Other Publications Using This Data

TCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.




Localtab
titleVersions

Version 1 (Current): 2019/06/21


Data TypeDownload all or Query/Filter
SAS Transport Files (XPT)

Image Analysis (CSV)





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