Localtab |
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active | true |
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title | Data Access |
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Data Type | Download all or Query/Filter | License |
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Slide Images (.SVS, 53 GB) | Image Removed Image Removed |
Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjU0MCIsInBhc3Njb2RlIjoiM2I4MDVjNGMxYzViMjY2YmFlMzdmYTcxMmU0ZDgyNzYyZDBjNTE4OSIsInBhY2thZ2VfaWQiOiI1NDAiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://pathdb.cancerimagingarchive.net/imagesearch?f%5B0%5D=collection:sln_breast |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | | Supplemental Data (CSV, 3kb) |
| Please note that Box has a 15GB download limit, so you will need to download images in batches. Click the Versions tab for more info about data releases. |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/52763339/target.csv?version=1&modificationDate=1563461391272&api=v2 |
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Localtab |
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title | Detailed Description |
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Image Statistics |
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Modalities | Pathology, WSI | Number of Participants | 78 | Number of Images | 130 | Images Size (GB) | 53 |
target.csv contains a binary label for each slide image in the dataset. - target=1 means that the image contains breast cancer metastases.
- target=0 means that the image does not contain breast cancer metastases.
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Localtab |
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title | Citations & Data Usage Policy |
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| publiccollection
Info |
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title | Publication Citation |
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| “Clinical-grade Computational Pathology using Weakly Supervised Deep Learning on Whole Slide Images”, Gabriele Campanella, Matthew G., Hanna, Luke M. G., Geneslaw, Allen Miraflor, Vitor L., Miraflor, A., Werneck Krauss Silva, Klaus V., Busam, K. J. Busam, Edi Brogi, Victor E., Reuter, David SV. E., Klimstra, Thomas J. Fuchs, Nature Medicine, July 2019D. S., & Fuchs, T. J. (2019). Clinical-grade computational pathology using weakly supervised deep learning on whole slide images. Nature Medicine (Vol. 25, Issue 8, pp. 1301–1309). Springer Science and Business Media LLC. https://doi.org/10.1038/s41591-019-0508-1 |
Info |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7 |
TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add pleaseplease contact the TCIA's Helpdesk. |
Localtab |
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Data Type | Download all or Query/Filter |
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Images (.SVS, 53 GB) | Image Removed Image Removed
Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjU0MCIsInBhc3Njb2RlIjoiM2I4MDVjNGMxYzViMjY2YmFlMzdmYTcxMmU0ZDgyNzYyZDBjNTE4OSIsInBhY2thZ2VfaWQiOiI1NDAiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://pathdb.cancerimagingarchive.net/imagesearch?f%5B0%5D=collection:sln_breast |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | Supplemental Data (CSV) |
| Please note that Box has a 15GB download limit, so you will need to download images in batches. |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/52763339/target.csv?version=1&modificationDate=1563461391272&api=v2 |
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(Download requires the NBIA Data Retriever) |
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