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| title | Data Access |
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| Data Access (Radiology)Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever. Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents. | Data Type | Download all or Query/Filter |
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| Images (DICOM, 5.5 GB) | | | Annotated Whole Slide Pathology Images (TIF, 195 GB) |  Image Removed
| | Clinical data (xlsxXLSX) | | | Supporting Data (ZIP) | |
Please note that Box has a 15GB download limit, so you will need to download images in batches. Click the Versions tab for more info about data releases. |
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| title | Detailed Description |
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| Detailed Description | | Pathology Image Statistics |
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Modalities | CT, Histology compartments mapped on CT (DICOM) | Pathology | Number of Patients | 6 | 6 | Number of Studies | 6 | 6 | Number of Series | 52 | N/A | Number of Images | 11,210 | 25 | | Image Size (GB) | 5.5 | 207 |
Supporting DocumentationWithin the directory CT_Segmentations_and_annotations/CT_Segmentations/<ptID>/ there are five directories: - BloodVessels (derived from CT)
- Nodule (derived from CT)
- MappedFromHistologyBloodVessels
- MappedFromHistologyInvasion
- MappedFromHistologyLesion
The filename to folder mappings for this directory structure are as follows: - CAP-lung-3000
- S12-21226 B1, B2, B3, & B6
- CAP-lung-3002
- CAP-lung-3005
- S06-13727 A3, A4, A5, & A6
- CAP-lung-3009
- CAP-lung-3011
- CAP-LUNG-3011_D2, D3, D4, D5, & D6
- Study 03
- 12-13495 B1, B2, B3, & B4
The data set is fully described in the following publications: Rusu et al. Co-registration of pre-operative CT with ex vivo surgically excised ground glass nodules to define spatial extent of invasive adenocarcinoma on in vivo imaging: a proof-of-concept study. European Radiology (2018); PMCID:PMC5630490 DOI:10.1007/s00330-017-4813-0
Pathology DataReconstructed, annotated whole slide pathology as well as fused Rad-Path objects are also available at https://pathology.cancerimagingarchive.net/pathdata/. |
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| title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy This collection is freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. See TCIA's Data Usage Policies and Restrictions for additional details. Questions may be directed to help@cancerimagingarchive.net. Please be sure to include the following citations in your work if you use this data set:
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| title | Publication Citation |
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| Rusu et al. Co-registration of pre-operative CT with ex vivo surgically excised ground glass nodules to define spatial extent of invasive adenocarcinoma on in vivo imaging: a proof-of-concept study. European Radiology (2018); PMCID:PMC5630490 DOI:10.1007/s00330-017-4813-0 |
| Info |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper) |
Other Publications Using This DataTCIA maintains a list of publications that leverage our data. At this time we are not aware of any publications based on this data. If you have a publication you'd like to add, please contact the TCIA Helpdesk. |
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| Version 1 (Current) Updated 07-30-2018Please note that Box has a 15GB download limit, so you will need to download images in batches.
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