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| active | true |
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| title | Data Access |
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| Data Access| Data Type | Download | License |
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| Tissue Slide Segmentation Results (SVS, 1,2 665 GB) | | Tcia button generator |
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| url | https://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveriespublic/166package?passcodecontext=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6Ijc2NiIsInBhc3Njb2RlIjoiMDgwNjQ5ZDRmOWRjZjMwMzllMDMyN2Y5Njk2MTU5NTkxNWY4MjNmMiIsInBhY2thZ2VfaWQiOiI3NjYiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0=23858b18f390cc2ead71ac70cd270030ab879e0d |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | | | List of histopathology slides (TXT, ) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/64685083/list_of_verified_wsis.txt?version=1&modificationDate=1629299932708&api=v2 |
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| | | Whole slide image-level quality control results (TXT, 151.4 KB) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/64685083/wsi_quality_control_result.txt?api=v2 |
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| | | Segmentation region checking results (TXT, 169.4 KB) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/64685083/random_segmentation_region_checking_result.txt?api=v2 |
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| | | Readme (DOCX, 20kb) |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/64685083/Read%20Me.docx?api=v2 |
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| | | crosswalk between patch filenames and TCGA case identifiers (TXT, 72 kb) | | Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/64685083/Pan-Cancer-Nuclei-Seg_1365patches_to_TCGA-ID_readme.txt?version=1&modificationDate=1667405727216&api=v2 |
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Click the Versions tab for more info about data releases. Please contact help@cancerimagingarchive.net with any questions regarding usage.
Collections Used in this Third Party Analysis
Below is a list of the Collections used in these analyses: - TCGA-BLCA,
- TCGA-BRCA,
- TCGA-CESC,
- TCGA-COAD,
- TCGA-GBM,
- TCGA-LUAD,
- TCGA-LUSC,
- TCGA-PAAD,
- TCGA-PRAD,
- TCGA-READ,
- TCGA-SKCM,
- TCGA-STAD,
- TCGA-UCEC,
- TCGA-UVM
Additional Resources for this Dataset Additional information about - Additional visual segmentation data can be found on PathDB
- Manual nucleus segmentation data of 1,365 patches: These 1,365 patches are randomly extracted from all 14 cancer types mentioned above. This data contains original H&E stained histopathology image patches, and instance-level segmentation masks. the process is in the readme.docx file and
- a crosswalk between patch filenames and TCGA case identifiers are within Pan-Cancer-Nuclei-Seg_1365patches_to_TCGA-ID_readme.txt file.
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| Localtab |
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| title | Detailed Description |
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| Detailed DescriptionAdditional visual segmentation data can be found on PathDB Manual nucleus segmentation data of 1,365 patches These 1,365 patches are randomly extracted from all 14 cancer types mentioned above. This data contains original H&E stained histopathology image patches, and instance-level segmentation masks. Additional information about the process is in the readme.docx file and a crosswalk between patch filenames and TCGA case identifiers are within Pan-Cancer-Nuclei-Seg_1365patches_to_TCGA-ID_readme.txt file. |
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| title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy | Tcia limited license policy |
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| Info |
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| Hou, L., Gupta, R., Van Arnam, J. S., Zhang, Y., Sivalenka, K., Samaras, D., Kurc, T., & Saltz, J. H. (2019). Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology Images of 10 Cancer Types [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.2019.4A4DKP9U |
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| title | Publication Citation |
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| Hou, L., Agarwal, A., Samaras, D., Kurc, T. M., Gupta, R. R., & Saltz, J. H. (2019, June). Robust Histopathology Image Analysis: To Label or to Synthesize? 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR). In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition , pp. 8533-8542. https://doi.org/10.1109/cvpr.2019.00873 Open Access Here |
| Info |
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| Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. Journal of Digital Imaging, 26(6), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.
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| Localtab |
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| Version 1 (Current): 2020/02/08
| Data Type | Download all or Query/Filter |
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| Tissue Slide Images (SVS, 1,200 GB) | | | List of histopathology slides (TXT, ) | | | WSI quality control results (TXT, 151.4 KB) | | | Segmentation region checking results (TXT, 169.4 KB) | |
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