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Description

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Image Added

This

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subset of NSCLC Radiogenomics contains images from patients with non-small cell lung cancer (NSCLC) imaged prior to surgical excision with both thin-section computed tomography (CT) and whole body positron emissions tomography (PET)/CT scans acquired under Institutional Review Board approval from

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Stanford University and the Veterans Administration Palo Alto Health Care System. The first installment of 26 cases (see shared list "NSCLC Radiogenomics: Initial Stanford Study of 26 Cases") corresponds to microarray data acquired from the excised samples, which is available on the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus , where Digital Imaging and Communications in Medicine (DICOM) patient names are identical to microarray sample names. For scientific inquiries relating to the data-set, please contact Drs. Sandy Napel ( snapel@stanford.edu ) or Sylvia K. Plevritis ( sylvia.plevritis@stanford.edu ).

 

 


Localtab Group


Localtab
activetrue
titleData Access

Data Access

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Click the Download  button to save a ".tcia" manifest file to your computer, which you must open with the  NBIA Data Retriever

Data TypeDownload all or Query/Filter
Images (DICOM

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)

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Microarray Samples

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Please contact help@cancerimagingarchive.net  with any questions regarding usage.


Localtab
titleDetailed Description

Detailed Description

Collection Statistics

 

Modalities

PET, CT

Number of Patients

26

Number of Studies

52

Number of Series

128

Number of Images

36,593

Image Size (GB)105

 

Microarray data acquired from the excised samples corresponding to these scans is available on the NCBI Gene Expression Omnibus, where DICOM patient names correspond to microarray sample names.

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The original 26 cases referenced in this manuscript have been renamed. A list of the mapping between GSM-XXX Patient IDs and R01-XXX Patient IDs can be found here .


Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

This collection is freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License.  See TCIA's Data Usage Policies and Restrictions for additional details. Questions may be directed to help@cancerimagingarchive.net.

Public collection license
Info
title

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Data Citation

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Napel, Sandy, & Plevritis, Sylvia K.

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(2014)

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. NSCLC Radiogenomics: Initial Stanford Study of 26 Cases

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. The Cancer Imaging Archive. http://

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doi.org/10.7937/K9/TCIA.2014.X7ONY6B1

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titlePublication Citation

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Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.

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 The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)

In addition to the dataset citation above, please be sure to cite the following if you utilize these data in your research:

Info
titlePublication Citation

Gevaert, O., Xu, J., Hoang, C. D., Leung, A. N., Xu, Y., Quon, A., … Plevritis, S. K. (2012, August). Non–Small Cell Lung Cancer: Identifying Prognostic Imaging Biomarkers by Leveraging Public Gene Expression Microarray Data—Methods and Preliminary Results. Radiology. Radiological Society of North America (RSNA). http://doi.org/10.1148/radiol.12111607

Other Publications Using This Data

TCIA maintains a list of publications that leverage TCIA data. If you have a

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manuscript you'd like to add please contact the TCIA Helpdesk.


Localtab
titleVersions

Version 1 (Current):

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2013/

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03/

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01

Data TypeDownload all or Query/Filter
Images (DICOM

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)

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Microarray Samples

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