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Napel, Sandy, & Plevritis, Sylvia K. (2014). NSCLC Radiogenomics: Initial Stanford Study of 26 Cases. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2014.X7ONY6B1 |
Description
This data set subset of NSCLC Radiogenomics contains images from patients with non-small cell lung cancer (NSCLC) imaged prior to surgical excision with both thin-section computed tomography (CT) and whole body positron emissions tomography (PET)/CT scans acquired under Institutional Review Board approval from StanfordUniversityand Stanford University and the Veterans Administration Palo Alto Health Care System. The first installment of 26 cases (see shared list "NSCLC Radiogenomics: Initial Stanford Study of 26 Cases") corresponds to microarray data acquired from the excised samples, which is available on the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus, where Digital Imaging and Communications in Medicine (DICOM) patient names are identical to microarray sample names.
For scientific inquiries relating to the data-set, please contact Drs. Sandy Napel (snapel@stanford.edu) or Sylvia K. Plevritis (sylvia.plevritis@stanford.edu).
and other inquiries about this dataset, please contact TCIA's Helpdesk.
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| title | Data Access |
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| Data Access
| Data Type | Download all or Query/Filter | License |
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| Images (DICOM, 7.7 GB) | | | | Microarray Samples | | |
Please contact help@cancerimagingarchive.net with any questions regarding usage. Collections Used in this Third Party AnalysisBelow is a list of the Collections used in these analyses: |
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| title | Detailed Description |
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| Detailed DescriptionThe original 26 cases referenced in this manuscript have been renamed. A list of the mapping between GSM-XXX Patient IDs and R01-XXX Patient IDs can be found here.
| Radiology Statistics |
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| Image Size (GB) | 7.7 | Modalities | CT, PT, SEG | Number of Images | 23,081 | Number of Participants | 26 | Number of Series | 119 | Number of Studies | 51 |
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| title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy | Tcia limited license policy |
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| Info |
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| Napel, Sandy, & Plevritis, Sylvia K. (2014). NSCLC Radiogenomics: Initial Stanford Study of 26 Cases (NSCLC Radiogenomics-Stanford) [Data Set]. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2014.X7ONY6B1 |
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| title | Publication Citation |
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| Gevaert, O., Xu, J., Hoang, C. D., Leung, A. N., Xu, Y., Quon, A., … Plevritis, S. K. (2012, August). |
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Non–Small Non-Small Cell Lung Cancer: Identifying Prognostic Imaging Biomarkers by Leveraging Public Gene Expression Microarray |
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Data—Methods |
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| Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045–1057). Springer Science and Business Media LLC. https://doi.org/10.1007/s10278-013-9622-7 PMCID: PMC3824915 |
Other Publications Using This DataTCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact TCIA's Helpdesk. |
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| Version 1 (Current): 2013/03/01| Data Type | Download all or Query/Filter |
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| Images (DICOM) | | | Microarray Samples | |
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