| Localtab |
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| active | true |
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| title | Data Access |
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| Data Access
| Data Type | Download all or Query/Filter | License |
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MNI-atlas MR/Segmentations, CWRU annotations only, Images (NIfTI, 131 files, 669 MB)
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| Tcia button generator |
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| url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjUzMiIsInBhc3Njb2RlIjoiZmY1MWY3MjIzMDQ4MDNmOTk2M2ZjMTkxZDY4ZTQwN2VjYmFhYjk4OCIsInBhY2thZ2VfaWQiOiI1MzIiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6Ijc2MCIsInBhc3Njb2RlIjoiOWJhOGIxODRkZDE5ZDNlNjliOWUwYjIwMDI1NGZjMGYyZDcyNjNkYiIsInBhY2thZ2VfaWQiOiI3NjAiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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| MNI faspex download |
(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | | SRI-atlas MR/Segmentations, UPenn & CWRU annotations, Images (NIfTI, 202 files, 469 MB)
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| Tcia button generator |
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| url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjYxNyIsInBhc3Njb2RlIjoiNmM2ZWQ0ODNhZmY0ZTE3OTAyYWRlMjRjNTAzYTIzYzUzZmI1YmJlZSIsInBhY2thZ2VfaWQiOiI2MTciLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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| SRI faspex download |
(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | | | Subject Meta-data (csv, 7 KB) | | Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70222827/ivygap_metadata.csv?api=v2 |
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| | Radiomic Features and Reproducibility Evaluation on SRI data (zip, 17.2 MB) | | Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70222827/Multi-Institutional%20Paired%20Expert%20Segmentations%20Radiomic%20Features%20%20and%20Reproducibility%20Evaluation%20on%20SRI.zip?api=v2 |
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| Eval wiki download |
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Collections Used in this Third Party AnalysisBelow is a list of the Collections used in these analyses: | Source Image Data | Download or Query/Filter | License |
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| Corresponding Original MR Images from IvyGAP (130.4 GB) | | Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/22515597/doiJNLP-IvyGAP.tcia?version=1&modificationDate=1534787022177&api=v2 |
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| Tcia button generator |
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| label | Search |
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| url | https://www.cancerimagingarchive.net/nbia-search/?CollectionCriteria=IvyGAP |
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(Download requires the NBIA Data Retriever and permission) | |
Please contact TCIA's Helpdeskwith any questions regarding usage.
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| Localtab |
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| title | Detailed Description |
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| Detailed Description
| Radiology Imaging Statistics |
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Modalities | MR, segmentation | Number of Participants | 37 | Number of Studies |
| Number of Series |
| Number of Images | 332 | | Images Size (GB) | 1.07 GB |
The data comprises of expert segmentation labels from each institution (i.e. 34 subjects from both UPenn and CWRU, with a total of 37), along with the corresponding co-registered and skull-stripped structural MRI scans in the space they were created (i.e., SRI for UPenn and MNI for CWRU), and the expert segmentation labels for the 31 common subjects co-registered in the SRI atlas. For brevity, we have included the corresponding SRI and MNI anatomical atlas files that we employed, the complete set of extracted radiomic features per subject for each of the 31 included subjects, along with the parameters used for the radiomic feature extraction and the correlation analysis results for identifying robust radiomic features, and finally, the identified robust radiomic features. |
| Localtab |
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| title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy
| Tcia limited license policy |
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| Info |
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| Pati, S., Verma, R., Akbari, H., Bilello, M., Hill, V.B., Sako, C., Correa, R., Beig, N., Venet, L., Thakur, S., Serai, P., Ha, S.M., Blake, G.D., Shinohara, R.T., Tiwari, P., Bakas, S. (2020). Data from the Multi-Institutional Paired Expert Segmentations and Radiomic Features of the Ivy GAP Dataset. DOI: https://doi.org/10.7937/9j41-7d44. |
| Info |
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| title | Publication Citation |
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| Pati, S., Verma, R., Akbari, H., Bilello, M., Hill, V.B., Sako, C., Correa, R., Beig, N., Venet, L., Thakur, S., Serai, P., Ha, S.M., Blake, G.D., Shinohara, R.T., Tiwari, P., Bakas, S. (2020). Reproducibility analysis of multi-institutional paired expert annotations and radiomic features of the Ivy Glioblastoma Atlas Project (Ivy GAP) dataset. Medical Physics TCIA Special Issue, In Press, 2020. DOI: https://doi.org/10.1002/mp.14556. |
| Info |
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| Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. Journal of Digital Imaging, 26(6), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact TCIA's Helpdesk. |
| Localtab |
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| Version 2 (Current): Updated 2023/04/23| Data Type | Download all or Query/Filter | License |
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Images (NIfTI, 669 MB) MNI MR/Segs (CWRU annotations only) | | Tcia button generator |
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| url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjYyMyIsInBhc3Njb2RlIjoiNTQxZDgzZGM3Y2YzMzE1MzUzYTE3OGI4YTFjNjA2OTBmZTQzZGM2MiIsInBhY2thZ2VfaWQiOiI2MjMiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6Ijc2MCIsInBhc3Njb2RlIjoiOWJhOGIxODRkZDE5ZDNlNjliOWUwYjIwMDI1NGZjMGYyZDcyNjNkYiIsInBhY2thZ2VfaWQiOiI3NjAiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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| MNI faspex download |
(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | | Images (NIfTI, 469 MB) SRI MR/Segs (UPenn & CWRU annotations) |
| Tcia button generator |
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| url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjYxNyIsInBhc3Njb2RlIjoiNmM2ZWQ0ODNhZmY0ZTE3OTAyYWRlMjRjNTAzYTIzYzUzZmI1YmJlZSIsInBhY2thZ2VfaWQiOiI2MTciLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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| SRI faspex download |
(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | | | Subjects' Meta-data (csv, 7 KB) |
| Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70222827/metadata.csv?api=v2 |
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| | Radiomic Features and Reproducibility Evaluation on SRI data (zip, 17.2 MB) | | Tcia button generator |
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| url | https://wiki.cancerimagingarchive.net/download/attachments/70222827/Multi-Institutional%20Paired%20Expert%20Segmentations%20Radiomic%20Features%20%20and%20Reproducibility%20Evaluation%20on%20SRI.zip?api=v2 |
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| Eval wiki download |
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Download location for some files moved from Box to Faspex. Data files not changed.
Version 1: Updated 2020/04/14
| Data Type | Download all or Query/Filter |
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Images (NIfTI, zip, 669 MB) MNI MR/Segs (CWRU annotations only) | | Tcia button generator |
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| url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjUzMiIsInBhc3Njb2RlIjoiZmY1MWY3MjIzMDQ4MDNmOTk2M2ZjMTkxZDY4ZTQwN2VjYmFhYjk4OCIsInBhY2thZ2VfaWQiOiI1MzIiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6Ijc2MCIsInBhc3Njb2RlIjoiOWJhOGIxODRkZDE5ZDNlNjliOWUwYjIwMDI1NGZjMGYyZDcyNjNkYiIsInBhY2thZ2VfaWQiOiI3NjAiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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| MNI faspex download |
| Images (NIfTI, zip, 469 MB) SRI MR/Segs (UPenn & CWRU annotations) | | Tcia button generator |
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| url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjQ5NCIsInBhc3Njb2RlIjoiMjliYWU2ZmFiYmFjNDdlY2U0ZmQyNDI4NDEzNjYzZjRhZTRmNjljNyIsInBhY2thZ2VfaWQiOiI0OTQiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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| | Subjects' Meta-data (csv, 7 KB) | | Radiomic Features and Reproducibility Evaluation on SRI data (zip, 17.2 MB) | |
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