Localtab |
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active | true |
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title | Data Access |
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| Data AccessClick the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever . Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents. Data Type | Download all or Query/Filter |
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Training set Phase 2 - Images (DICOM, 1321 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BSC-DBT%20Train%20Phase%202%20manifest.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?saved-cart=nbia-44301621872553115 |
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| Training set Phase 2 - Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-train%20PHASE%202.csv?api=v2 |
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| Training set Phase 2 - Spreadsheet indicating which group each cases belongs to (see the paper for details on the groups) (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20labels-train%20PHASE%202.csv?api=v2 |
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| Training set Phase 2 - Boxes indicating lesion locations, identical to Phase 1 (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20boxes-train-v2.csv?api=v2 |
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| Validation set Phase 2 - Images (DICOM, 79 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BSC-DBT%20Validation%20Phase%202%20manifest.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?saved-cart=nbia-40231621863548077 |
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| Validation set Phase 2- Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-validation%20PHASE%202.csv?api=v2https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-validation%20PHASE%202.csv?api=v2 |
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| Test set Phase 2 - Images (DICOM, 126 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BSC-DBT%20Test%20Phase%202%20manifest.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?saved-cart=nbia-26591621862922478 |
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| Test set Phase 2 - Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-test%20PHASE%202.csv?api=v2 |
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Click the Versions tab for more info about data releases. |
Localtab |
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title | Detailed Description |
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| Detailed Description | |
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Modalities | DBT | Number of Participants | 5060 | Number of Studies | 5610 | Number of Series | 22032 | Number of Images | 22032 | Images Size (GB, compressed) | 1526 |
Important considerations when using this datasetSome scans contain skin markers. These markers can indicate moles, scars, other skin issues, palpable masses, or other areas of concern. The presence of these markers is reflective of clinical practice and a marker does not necessarily indicate a breast lesion. Each DBT exam typically consists of 4 views (2 per breast, craniocaudal and mediolateral oblique) but for some exams less than 4 views may be available for analysis. Images are stored in compressed DICOM format, with an entire 3D volume (view) per DICOM file. The images can be read with Radiant, MicroDICOM, ImageJ (with the Bio-Formats plug-in), Matlab, and all the main DICOM toolkits: GDCM, dcmtk, dicom3tools. If using ImageJ, image files might first need to be uncompressed using one of the toolkits (e.g., with GDCM — `gdcmconv -w compressed.dcm uncompressed.dcm`). Required preprocessing of DBT images: For some of the images, the laterality stored in the DICOM header and/or image orientation are incorrect. The reference standard "truth" boxes are defined with respect to the corrected image orientation in these instances. Therefore, it is crucial to provide your results for images in the correct image orientation. Python functions for loading image data from a DICOM file into 3D array of pixel values in the correct orientation and for displaying "truth" boxes (if any) are onon GitHub. Please see the readme file there for instructions. DBTex ChallengePart of this dataset is used for the DBTex challenge (http://spie-aapm-nci-dair.westus2.cloudapp.azure.com/competitions/4), which contains a total of 22032 breast tomosynthesis scans from 5060 patients from this collection. The challenge dataset is broken down into the following cohorts: - Total: 22032 scans
- Training: 19148 scans
- Validation: 1163 scans
- Test: 1721 scans
Release of training Training set (with truth): The training set will consist consists of 19148 cases. This dataset will be representative of the technical properties (equipment, acquisition parameters, file format) and the nature of lesions in the validation and test sets. An associated Excel file in CSV format will include DBT scan identifier and the definition of the bounding box of all lesions. Release of validation Validation set (without truth): The validation set will consist of 1163 cases. The locations of lesions will not be provided. The validation set needs to be processed, manipulated, and analyzed without human intervention. Validation set output submitted through the online challenge interface will contribute to the challenge leader board. Release of test Test set (without truth): The test set will consist of 1721 cases. The locations of lesions will not be provided. The test set needs to be processed, manipulated, and analyzed without human intervention. |
Localtab |
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title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy Tcia license 4 noncommercial |
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Info |
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| Buda, M., Saha, A., Walsh, R., Ghate, S., Li, N., Święcicki, A., Lo, J.Y., Yang, J., & Mazurowski, M.A. (2020). Data from the Breast Cancer Screening – Digital Breast Tomosynthesis (BCS-DBT). Data from The Cancer Imaging Archive. (2020). DOI: https://doi.org/10.7937/e4wt-cd02. |
Info |
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title | Publication Citation |
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| M. Buda, A. Saha, R. Walsh, S. Ghate, N. Li, A. Święcicki, J. Y. Lo, M. A. Mazurowski, Detection of masses and architectural distortions in digital breast tomosynthesis: a publicly available dataset of 5,060 patients and a deep learning model. arXiv preprint https://arxiv.org/abs/2011.07995. |
Info |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk. |
Localtab |
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| Version 4 (Current): Updated 2021/05/24Data Type | Download all or Query/Filter |
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Training set Phase 2 - Images (DICOM, 1321 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BSC-DBT%20Train%20Phase%202%20manifest.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?saved-cart=nbia-2791621866040011 |
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| Training set Phase 2 - Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-train%20PHASE%202.csv?api=v2 |
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| Training set Phase 2 - Spreadsheet indicating which group each cases belongs to (see the paper for details on the groups) (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20labels-train%20PHASE%202.csv?api=v2 |
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| Training set Phase 2 - Boxes indicating lesion locations, identical to Phase 1 (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20boxes-train-v2.csv?api=v2 |
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| Validation set Phase 2 - Images (DICOM, 79 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BSC-DBT%20Validation%20Phase%202%20manifest.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?saved-cart=nbia-40231621863548077 |
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| Validation set Phase 2- Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-validation%20PHASE%202.csv?api=v2https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-validation%20PHASE%202.csv?api=v2 |
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| Test set Phase 2 - Images (DICOM, 126 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BSC-DBT%20Test%20Phase%202%20manifest.tcia?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?saved-cart=nbia-26591621862922478 |
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| Test set Phase 2 - Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-test%20PHASE%202.csv?api=v2 |
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Added Phase 2 images and spreadsheets. Previous versions (1,2, 3) are now "Phase 1". Version 3: Updated 2021/01/15Data Type | Download all or Query/Filter |
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Test set - Images (DICOM, 47 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT-Challenge-Test.TCIA?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?saved-cart=nbia-78441610719428450 |
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| Test set - Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-test.csv?api=v2 |
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| Validation set - Images (DICOM, 28 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT-Challenge%20Validation.TCIA?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&PatientCriteria=DBT-P00002,DBT-P00114,DBT-P00160,DBT-P00176,DBT-P00213,DBT-P00238,DBT-P00351,DBT-P00385,DBT-P00431,DBT-P00450,DBT-P00547,DBT-P00549,DBT-P00577,DBT-P00651,DBT-P00655,DBT-P00697,DBT-P00714,DBT-P00718,DBT-P00843,DBT-P00844,DBT-P00864,DBT-P00866,DBT-P01150,DBT-P01152,DBT-P01153,DBT-P01173,DBT-P01207,DBT-P01226,DBT-P01249,DBT-P01293,DBT-P01296,DBT-P01305,DBT-P01334,DBT-P01356,DBT-P01490,DBT-P01496,DBT-P01536,DBT-P01538,DBT-P01700,DBT-P01746,DBT-P01772,DBT-P01778,DBT-P01849,DBT-P01851,DBT-P01941,DBT-P01957,DBT-P01967,DBT-P02072,DBT-P02111,DBT-P02117,DBT-P02160,DBT-P02170,DBT-P02214,DBT-P02226,DBT-P02314,DBT-P02381,DBT-P02394,DBT-P02498,DBT-P02558,DBT-P02560,DBT-P02598,DBT-P02648,DBT-P02686,DBT-P02766,DBT-P02776,DBT-P02816,DBT-P02864,DBT-P02898,DBT-P02959,DBT-P02989,DBT-P03027,DBT-P03092,DBT-P03110,DBT-P03113,DBT-P03129,DBT-P03215,DBT-P03263,DBT-P03343,DBT-P03360,DBT-P03390,DBT-P03403,DBT-P03448,DBT-P03501,DBT-P03574,DBT-P03598,DBT-P03605,DBT-P03621,DBT-P03628,DBT-P03651,DBT-P03689,DBT-P03694,DBT-P03728,DBT-P03831,DBT-P03901,DBT-P04008,DBT-P04045,DBT-P04087,DBT-P04097,DBT-P04105,DBT-P04106,DBT-P04208,DBT-P04257,DBT-P04295,DBT-P04344,DBT-P04346,DBT-P04380,DBT-P04396,DBT-P04577,DBT-P04596,DBT-P04622,DBT-P04695,DBT-P04803,DBT-P04808,DBT-P04837,DBT-P04884,DBT-P05018,DBT-P05060&CollectionCriteria=Breast-Cancer-Screening-DBT |
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| Validation set - Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-validation.csv?api=v2 |
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| Training set - Images (DICOM, 186 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/DBT-Challenge-Train.TCIA?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?saved-cart=nbia-3321609785776535 |
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| Training set - Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-train.csv?api=v2 |
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| Training set - Boxes indicating lesion locations (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20boxes-train-v2.csv?api=v2 |
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| Training set - Spreadsheet indicating which group each cases belongs to (see the paper for details on the groups) (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20labels-train.csv?api=v2 |
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Test set - Images added. Test set - Image paths for patients/studies/views spreadsheet added. Version 2: Updated 2021/01/04Data Type | Download all or Query/Filter |
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Validation set - Images (DICOM, 28 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT-Challenge%20Validation.TCIA?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&PatientCriteria=DBT-P00002,DBT-P00114,DBT-P00160,DBT-P00176,DBT-P00213,DBT-P00238,DBT-P00351,DBT-P00385,DBT-P00431,DBT-P00450,DBT-P00547,DBT-P00549,DBT-P00577,DBT-P00651,DBT-P00655,DBT-P00697,DBT-P00714,DBT-P00718,DBT-P00843,DBT-P00844,DBT-P00864,DBT-P00866,DBT-P01150,DBT-P01152,DBT-P01153,DBT-P01173,DBT-P01207,DBT-P01226,DBT-P01249,DBT-P01293,DBT-P01296,DBT-P01305,DBT-P01334,DBT-P01356,DBT-P01490,DBT-P01496,DBT-P01536,DBT-P01538,DBT-P01700,DBT-P01746,DBT-P01772,DBT-P01778,DBT-P01849,DBT-P01851,DBT-P01941,DBT-P01957,DBT-P01967,DBT-P02072,DBT-P02111,DBT-P02117,DBT-P02160,DBT-P02170,DBT-P02214,DBT-P02226,DBT-P02314,DBT-P02381,DBT-P02394,DBT-P02498,DBT-P02558,DBT-P02560,DBT-P02598,DBT-P02648,DBT-P02686,DBT-P02766,DBT-P02776,DBT-P02816,DBT-P02864,DBT-P02898,DBT-P02959,DBT-P02989,DBT-P03027,DBT-P03092,DBT-P03110,DBT-P03113,DBT-P03129,DBT-P03215,DBT-P03263,DBT-P03343,DBT-P03360,DBT-P03390,DBT-P03403,DBT-P03448,DBT-P03501,DBT-P03574,DBT-P03598,DBT-P03605,DBT-P03621,DBT-P03628,DBT-P03651,DBT-P03689,DBT-P03694,DBT-P03728,DBT-P03831,DBT-P03901,DBT-P04008,DBT-P04045,DBT-P04087,DBT-P04097,DBT-P04105,DBT-P04106,DBT-P04208,DBT-P04257,DBT-P04295,DBT-P04344,DBT-P04346,DBT-P04380,DBT-P04396,DBT-P04577,DBT-P04596,DBT-P04622,DBT-P04695,DBT-P04803,DBT-P04808,DBT-P04837,DBT-P04884,DBT-P05018,DBT-P05060&CollectionCriteria=Breast-Cancer-Screening-DBT |
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| Validation set - Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-validation.csv?api=v2 |
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| Training set - Images (DICOM, 186 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/DBT-Challenge-Train.TCIA?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?saved-cart=nbia-3321609785776535 |
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| Training set - Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-train.csv?api=v2 |
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| Training set - Boxes indicating lesion locations (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20boxes-train-v2.csv?api=v2 |
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| Training set - Spreadsheet indicating which group each cases belongs to (see the paper for details on the groups) (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20labels-train.csv?api=v2 |
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Validation set - Images added. Validation set - Image paths for patients/studies/views spreadsheet added. Volume Slices column added to the Training set - Boxes indicating lesion locations spreadsheet. Version 1: Updated 2020/12/14Data Type | Download all or Query/Filter |
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Training set - Images (DICOM, 186 GB) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/DBT-Challenge-Train.TCIA?api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?saved-cart=nbia-3321609785776535 |
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| Training set - Image paths for patients/studies/views (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20file-paths-train.csv?api=v2 |
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| Training set - Boxes indicating lesion locations (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20boxes-train.csv?api=v2 |
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| Training set - Spreadsheet indicating which group each cases belongs to (see the paper for details on the groups) (csv) | Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/64685580/BCS-DBT%20labels-train.csv?api=v2 |
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