| Localtab |
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| active | true |
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| title | Data Access |
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| Data Access Click the Download button to be redirected to Box for downloads. Note that Box has a 15GB at one time max download restriction.
| Data Type | Download all or Query/Filter |
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| Tissue Slide Images (SVS, 1,200 GB) | | | List of histopathology slides (TXT, ) | | | WSI quality control results (TXT, 151.4 KB) | | | Segmentation region checking results (TXT, 169.4 KB) | |
Click the Versions tab for more info about data releases. Note: Please contact help@cancerimagingarchive.net with any questions regarding usage. Collections Used in this Third Party Analysis
Below is a list of the Collections used in these analyses: - TCGA-BLCA,
- TCGA-BRCA,
- TCGA-CESC,
- TCGA-COAD,
- TCGA-GBM,
- TCGA-LUAD,
- TCGA-LUSC,
- TCGA-PAAD,
- TCGA-PRAD,
- TCGA-READ,
- TCGA-SKCM,
- TCGA-STAD,
- TCGA-UCEC,
- TCGA-UVM
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| Localtab |
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| title | Detailed Description |
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| Detailed DescriptionAdditional visual segmentation data can be found on PathDB Manual nucleus segmentation data of 1,356 patches These 1,356 patches are randomly extracted from all 14 cancer types mentioned above. This data contains original H&E stained histopathology image patches, and instance-level segmentation masks. Additional information is in the readme.txt file of this data. Download here |
| Localtab |
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| title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy | Public collection license |
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| Info |
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| Le Hou, L., Rajarsi Gupta, John SR., Van Arnam, Yuwei J. S., Zhang, Kaustubh Y., Sivalenka, Dimitris K., Samaras, Tahsin MD., Kurc, Joel T., & Saltz, J. H. Saltz (2019). Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology Images of 10 Cancer Types [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/tciaTCIA.2019.4a4dkp9u4A4DKP9U |
| Info |
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| title | Publication Citation |
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| Hou, LeL., Ayush Agarwal, Dimitris Samaras, Tahsin M. Kurc, Rajarsi R. Gupta, and Joel H. Saltz. "A., Samaras, D., Kurc, T. M., Gupta, R. R., & Saltz, J. H. (2019, June). Robust Histopathology Image Analysis: To Label or to Synthesize?." In 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR). In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition , pp. 8533-8542. https://doi.org/10.1109/cvpr.2019.00873 Open Access Here |
| Info |
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| Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. The (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, . Journal of Digital Imaging, Volume 26, Number (6, December, 2013, pp 1045-1057. (paper)), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.
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| Localtab |
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| Version 1 (Current): 2020/02/08
| Data Type | Download all or Query/Filter |
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| Tissue Slide Images (SVS, 1,200 GB) | | | List of histopathology slides (TXT, ) | | | WSI quality control results (TXT, 151.4 KB) | | | Segmentation region checking results (TXT, 169.4 KB) | |
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