These MRIs are pre-operative examinations performed in 159 subjects with Low Grade Gliomas (WHO grade II & III). Segmentation of tumors in three axial slices that include the one with the largest tumor diameter and ones below and above are provided in NiFTI format. Tumor grade and histologic type are also available. All of these subjects have biopsy proven 1p19q results, performed using FISH. For the 1p/19q status "n/n" means neither 1p nor 19q were deleted. "d/d" means 1p and 19q are co-deleted.
Choosing the Download option will provide you with a file to launch the TCIA Download Manager to download the entire collection. If you want to browse or filter the data to select only specific scans/studies please use the Search By Collection option.
|Data Type||Download all or Query/Filter|
|Images (DICOM, 2.7GB)|
|Segmentations (NiFTI, 2.9GB)|
|1p19q Status and Histologic Type|
Click the Versions tab for more info about data releases.
MRI, SEG, NIfTI
Number of Patients
Number of Studies
Number of Series
Number of Images
|Image Size (GB)||2.7|
Supporting Documentation and Metadata
For the 1p/19q status "n/n" means neither 1p nor 19q were deleted. "d/d" means 1p and 19q are co-deleted.
Citations & Data Usage Policy
This collection is freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. See TCIA's Data Usage Policies and Restrictions for additional details. Questions may be directed to firstname.lastname@example.org.
Please be sure to include the following citations in your work if you use this data set:
Erickson, Bradley; Akkus, Zeynettin; Sedlar, Jiri; Korfiatis, Panagiotis. (2017). Data From LGG-1p19qDeletion. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2017.dwehtz9v
Predicting Deletion of Chromosomal Arms 1p/19q in Low-Grade Gliomas from MR Images Using Machine Intelligence. Zeynettin Akkus, Issa Ali, Jiří Sedlář, Jay P. Agrawal, Ian F. Parney, Caterina Giannini,and Bradley J. Erickson. J Digit Imaging. 2017 Aug; 30(4): 469–476. Published online 2017 Jun 9. doi: 10.1007/s10278-017-9984-3. PMCID: PMC5537096
Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)
Other Publications Using This Data
- https://doi.org/10.1007/s10278-017-9965-6 Bradley J. Erickson, Panagiotis Korfiatis, Zeynettin Akkus, Timothy Kline, Kenneth Philbrick. Toolkits and Libraries for Deep Learning. Journal of Digital Imaging 2017 p1618-1627.