The Cancer Imaging Archive (TCIA) Public Access

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  • A whole-body FDG-PET/CT dataset with manually annotated tumor lesions (FDG-PET-CT-Lesions)

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Localtab Group


Localtab
activetrue
titleData Access

Data Access

Data TypeDownload all or Query/Filter

Images and Segmentations (DICOM, 418.9 GB)


Tcia button generator



Tcia button generator
labelSearch


(Download requires the NBIA Data Retriever)

Clinical data (CSV)


Tcia button generator



Tumor Segmentation Masks (NIfTI, XX GB)

<link to package>

Preprocessed aligned and resampled
PET, CT and mask data compiled as HDF5 file

<link to package>

https://github.com/lab-midas/TCIA_processing.git

Click the Versions tab for more info about data releases.

Please contact help@cancerimagingarchive.net  with any questions regarding usage.


Localtab
titleDetailed Description

Detailed Description

Image Statistics


Modalities

PT, CT, and SEG

Number of Patients

900

Number of Studies

1014

Number of Series

3088

Number of Images

916,957

Images Size (GB)418.9

Notes: 

Here are conversion scripts for these data https://github.com/lab-midas/TCIA_processing

  • Converts DICOM to NIfTI , and also create resampled/resliced CT and an SUV file
  • It is straight forward to generate HDF5 files from the NIfTI files using tcia_nifti_to_hdf5.py.
  • Organizes NIfTI into HDF5 structure; note this output is a single large package.

SEG are most easily reviewed as overlay using MITK viewer or 3D Slicer.



Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy

Tcia head license access


Info
titleData Citation

Hepp T, Gatidis S. A whole-body FDG-PET/CT dataset with manually annotated tumor lesions (FDG-PET-CT-Lesions) [Dataset]. The Cancer Imaging Archive, 2022. DOI: 10.7937/gkr0-xv29 


Info
titlePublication Citation

<article coming soon>


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.


Localtab
titleVersions

Version 1 (Current): Updated 2022/03/15

Data TypeDownload all or Query/Filter
Images (DICOM, 418.9 GB)


Tcia button generator



Tcia button generator
labelSearch



(Requires NBIA Data Retriever.)

Clinical data (CSV)


Tcia button generator



Tumor Segmentation Masks (NIfTI, XX GB)

<link to package>

Code to create Preprocessed aligned and resampled
PET, CT and mask data compiled as HDF5 file

<link to package>https://github.com/lab-midas/TCIA_processing.git