The Cancer Imaging Archive (TCIA) Public Access

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  • Multi-parametric magnetic resonance imaging (mpMRI) scans for de novo Glioblastoma (GBM) patients from the University of Pennsylvania Health System (UPENN-GBM)

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changes.mady.by.user Brenda Fevrier-Sullivan

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changes.mady.by.user natasha honomichl

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Comment: histopathology imaging added to collection

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Localtab Group


Localtab
activetrue
titleData Access

Data Access

Data TypeDownload all or Query/FilterLicense

Images (DICOM, 139.4 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM-manifest_20210923.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=UPENN-GBM



(Download requires the NBIA Data Retriever)

Tcia cc by 4

Images (NIfTI, 69 GB) 


Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/294?passcode=42e4a6b19c2e942278758df89029e0011fefb5be



(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Tcia cc by 4

Clinical Data

Histopathology Images (

CSV, 51 kB

NDPI, 149 GB)


Tcia button generator
urlhttps://
wiki
faspex.cancerimagingarchive.net/
download
aspera/
attachments
faspex/
70225642/https://
external_deliveries/332?passcode=47b546b57f9737fed715a077ec0bb2f2678f8877



Tcia button generator
labelSearch
urlhttps://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:upenn_gbm


s(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Tcia cc by 4

Clinical Data (CSV, 51 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_clinical_info_v1.
1
0.csv?api=
v2https
v2



Tcia cc by 4

Histopathology to Radiology Filename Mapping (CSV, 2 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/
UPENN-GBM_clinical_info_v1.0
radiology_mapping.csv?version=1&modificationDate=1666627440627&api=v2



Tcia cc by 4

Image acquisition parameters (CSV, 195 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_acquisition.csv?api=v2



Tcia cc by 4

Data availability per subject (CSV, 126 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_data_availability.csv?api=v2



Tcia cc by 4

CaPTk radiomic features list (CSV, 6 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_CaPTk_radiomic_features_list.csv?api=v2



Tcia cc by 4

CaPTk radiomic feature parameter file (CSV, 4 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_CaPTk_fe_params.csv?api=v2



Tcia cc by 4

Radiomic Data (ZIP,15.37 MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/radiomic_features_CaPTk.zip?api=v2



Tcia cc by 4

Click the Versions tab for more info about data releases.

Please contact help@cancerimagingarchive.net  with any questions regarding usage.

Nci_crdc additional resources


Localtab
titleDetailed Description

Detailed Description

Image Statistics



Modalities

MR

Pathology

Number of Patients

630

34

Number of Studies

3,301

N/A

Number of Series

3,680

N/A

Number of Images

828,234

71

Images Size (GB)139.4149


Note from the submitting group:  The NIfTI images are all registered to a common atlas (SRI) using a uniform preprocessing and the segmentation are aligned with them. Therefore the NIfTI images will not align with the DICOM images, by design. If you load the NIfTI images (like T1/T2) and their related segmentation, these will line up.


Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy

Tcia limited license policy

Info
titleData Citation

Bakas, S., Sako, C., Akbari, H., Bilello, M., Sotiras, A., Shukla, G., Rudie, J. D., Flores Santamaria, N., Fathi Kazerooni, A., Pati, S., Rathore, S., Mamourian, E., Ha, S. M., Parker, W., Doshi, J., Baid, U., Bergman, M., Binder, Z. A., Verma, R., … Davatzikos, C. (2021). Multi-parametric magnetic resonance imaging (mpMRI) scans for de novo Glioblastoma (GBM) patients from the University of Pennsylvania Health System (UPENN-GBM) (Version 2) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.709X-DN49


Info
titlePublication Citation

Bakas, S., Sako, C., Akbari, H., Bilello, M., Sotiras, A., Shukla, G., Rudie, J. D., Flores Santamaria, N., Fathi Kazerooni, A., Pati, S., Rathore, S., Mamourian, E., Ha, S. M., Parker, W., Doshi, J., Baid, U., Bergman, M., Binder, Z. A., Verma, R., Lustig, R., Desai, A. S., Bagley, S. J., Mourelatos, Z., Morrissette, J., Watt, C. D., Brem, S., Wolf, R. L., Melhem, E. R., Nasrallah, M. P., Mohan, S., O’Rourke, D. M., Davatzikos, C. “The University of Pennsylvania glioblastoma (UPenn-GBM) cohort: advanced MRI, clinical, genomics, & radiomics”, Nature Scientific Data, [In Press], 2022


Info
titleTCIA Citation

Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. Journal of Digital Imaging, 26(6), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.


Localtab
titleVersions

Version 2 (Current): 2022/10/24

Data TypeDownload all or Query/FilterLicense

Images (DICOM, 139.4 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM-manifest_20210923.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1
(Current)
&CollectionCriteria=UPENN-GBM



(Download requires the NBIA Data Retriever)

Tcia cc by 4

Images (NIfTI, 69 GB) 


Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/294?passcode=42e4a6b19c2e942278758df89029e0011fefb5be



(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Tcia cc by 4

Histopathology Images (NDPI, 149 GB)


Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/332?passcode=47b546b57f9737fed715a077ec0bb2f2678f8877



Tcia button generator
labelSearch
urlhttps://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:upenn_gbm


(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Tcia cc by 4

Clinical Data (CSV, 51 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_clinical_info_v1.0.csv?api=v2



Tcia cc by 4

Histopathology to Radiology Filename Mapping (CSV, 2kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/radiology_mapping.csv?version=1&modificationDate=1666627440627&api=v2



Tcia cc by 4

Image acquisition parameters (CSV, 195 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_acquisition.csv?api=v2



Tcia cc by 4

Data availability per subject (CSV, 126 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_data_availability.csv?api=v2



Tcia cc by 4

CaPTk radiomic features list (CSV, 6 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_CaPTk_radiomic_features_list.csv?api=v2



Tcia cc by 4

CaPTk radiomic feature parameter file (CSV, 4 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_CaPTk_fe_params.csv?api=v2



Tcia cc by 4

Radiomic Data (ZIP,15.37 MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/radiomic_features_CaPTk.zip?api=v2



Tcia cc by 4

changes: Histopathology NDPI slides added to collection. CSV file for mapping Radiology subject IDs to Histopathology patient and image IDs where available (note: not all Radiology data has associated pathology data and vise versa).

Version 1: 2022/06/21

Data TypeDownload all or Query/FilterLicense

Images (DICOM, 139.4 GB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM-manifest_20210923.tcia?api=v2



Tcia button generator
labelSearch
urlhttps://nbia.cancerimagingarchive.net/nbia-search/?MinNumberOfStudiesCriteria=1&CollectionCriteria=UPENN-GBM



(Download requires the NBIA Data Retriever)

Tcia cc by 4

Images (NIfTI, 69 GB) 


Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/294?passcode=42e4a6b19c2e942278758df89029e0011fefb5be



(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Tcia cc by 4

Clinical Data (CSV, 51 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_clinical_info_v1.1.csv?api=v2https://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_clinical_info_v1.0.csv?api=v2



Tcia cc by 4

Image acquisition parameters (CSV, 195 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_acquisition.csv?api=v2



Tcia cc by 4

Data availability per subject (CSV, 126 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_data_availability.csv?api=v2



Tcia cc by 4

CaPTk radiomic features list (CSV, 6 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_CaPTk_radiomic_features_list.csv?api=v2



Tcia cc by 4

CaPTk radiomic feature parameter file (CSV, 4 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/UPENN-GBM_CaPTk_fe_params.csv?api=v2



Tcia cc by 4

Radiomic Data (ZIP,15.37 MB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/radiomic_features_CaPTk.zip?api=v2



Tcia cc by 4

CaPTk radiomic feature parameter (CSV, 5KB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/70225642/captk_parameter_file_ispy1.csv?api=v2



Tcia cc by 4



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