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  • H&E and immunohistochemical stain images of 209 cases of diffuse large B-cell lymphoma linked with cytogenetic features and clinical outcomes (DLBCL-Morphology)

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Localtab Group


Localtab
activetrue
titleData Access

Data Access

Data TypeDownload all or Query/FilterLicense
Tissue Slide Images (SVS, 350GB)


Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/269?passcode=5796b1ab3f7d17d13ab1df035c15a6835fd9c59a



Tcia button generator
labelSearch
urlhttps://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:dlbcl_morph



(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 


Clinical data (CSV, 16 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/119702520/clinical_data_cleaned.csv?api=v2



Clinical data column descriptions (CSV, 3 kB)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/119702520/column_description.csv?api=v2



Click the Versions tab for more info about data releases.

Please contact help@cancerimagingarchive.net  with any questions regarding usage.


Localtab
titleDetailed Description

Detailed Description

Image Statistics


Modalities

Pathology

Number of Patients

209

Number of Images

246

Images Size (GB)350

Additional information about TM folder in dataset

Each row in the core.csv corresponds to a TMA core where ‘patient_id’ corresponds to the id of the patient the core belongs to. The columns ’tma_id’, ‘row’, and ‘col’ are used for locating the core in the TMA where ‘row’ and ‘col’ refers to the row and column location of the core in the TMA file with filename ’tma_id’.

In the annotations.csv file, the columns xs, ys, xe, & ye are coordinates (’s’ and ‘e’ abbreviated for ’start’ and ‘end’, respectively) where (xs, ys) and (xe, ye) is the xy-coordinates of the upper left corner and lower right corner of the annotation respectively.



Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy

Tcia limited license policy

Info
titleData Citation

Fernandez-Pol, S., Natkunam, Y., Vrabac, D., Rojansky, R., Advani, R., Rajpurkar, P., S, & Ng, Andrew Y. (2022). H&E and immunohistochemical stain images of 209 cases of diffuse large B-cell lymphoma linked with cytogenetic features and clinical outcomes (Version 1) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/NVA3-N783 


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.


Localtab
titleVersions

Version 1 (Current): Updated 2022/03/25

Data TypeDownload all or Query/Filter
Images (SVS, 350GB)


Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex/external_deliveries/269?passcode=5796b1ab3f7d17d13ab1df035c15a6835fd9c59a



Tcia button generator
labelSearch
urlhttps://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:dlbcl_morph



(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Clinical Data (CSV)


Tcia button generator
urlhttps://wiki.cancerimagingarchive.net/download/attachments/119702520/clinical_data_cleaned.csv?version=1&modificationDate=1648577731791&api=v2





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