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Proteogenomic analysis of Lung Adenocarcinoma (July 22, 2020)
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Shankha Satpathy presents about the consortium's proteogenomic analyses of the
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Adenocarcinoma (LUAD) cohort. This deep dive into the LUAD genomic and proteomic datasets will help researchers better understand how these can be correlated with features derived from the imaging data.
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Proteogenomic analysis of Glioblastoma (May 13, 2020)
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Liang-Bo Wang and Runyu Hong present the consortium's proteogenomic analyses of the CPTAC CPTAC Glioblastoma (GBM) cohort cohort. This deep dive into the GBM genomic and proteomic datasets will help researchers better understand how these can be correlated with features derived from the imaging data. Note: The slides and video from this presentation will be posted here after the publication of their related manuscript on these efforts.(Download the slides)
NCI-OCCPR Webinar: The Cancer Imaging Archive (March 18, 2020)
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In collaboration with NCI's Office of Cancer Clinical Proteomics Research (OCCPR), Justin Kirby presents an overview of The Cancer Imaging Archive (TCIA) and its support for the Clinical Proteomics Tumor Analysis Consortium (CPTAC) imaging data. In this webinar he provides an overview of TCIA functionality and datasets with a special emphasis on the >1500 radiology and histology cases associated with the CPTAC patient cohorts. He also discusses how to access clinical, proteomic, and genomic data found in other CPTAC resources to facilitate correlation studies across multiple data types. (Download the slides)
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Proteogenomic analysis of
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*** We regret to announce that Dr. Gillette has been pulled into emergency clinical duties today and will need to re-schedule this presentation. We will provide an update once a new date and time have been finalized. ***
Please join us at 12pm Eastern on March 3, 2020 for Dr. Michael Gillette's presentation about the consortium's proteogenomic analyses of the CPTAC Lung Adenocarcinoma (LUAD) cohort. This deep dive into the LUAD genomic and proteomic datasets will help researchers better understand how these can be correlated with features derived from the imaging data.
Proteogenomic analysis of Clear Cell Renal Cell Carcinoma (February 4, 2020)
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Dr. David Clarke presents the consortium's proteogenomic analyses of the CPTAC CPTAC Clear Cell Renal Cell Carcinoma Carcinoma (CCRCC) cohort cohort. This deep dive into the CCRCC genomic and proteomic datasets will help researchers better understand how these can be correlated with features derived from the imaging data. (Download the slides)
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Emily Kawaler presents the consortium's proteogenomic analyses of the CPTAC Uterine Corpus Endometrial Carcinoma (UCEC) cohort. This deep dive into the UCEC genomic and proteomic datasets will help researchers better understand how they can be correlated with features derived from the imaging data. (Download the slides)
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During this webinar you'll learn about a python-based open source tool (https://github.com/PayneLab/CPTAC) being developed by members of Sam Payne's lab at BYU which saves researchers the trouble of having to individually navigate the various websites where proteomic, genomic, and clinical data are stored. The slide deck is available here: CPTAC SIG - 2019-08-06 - Easy Data Dissemination by Sam Payne.pptx
Program overview & data access tutorials (July 1, 2019)
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Agenda & Slides
- Welcome (Bob Nordstrom)
- Clinical Proteomic Tumor Analysis Consortium (CPTAC) Project Overview (Chris Kinsinger, 15min)
- CPTAC radiology & pathology image data at TCIA – live demo (Justin Kirby, 15min)
- CPTAC Data Portal and the Proteomics Data Commons (R. Rajesh Thangudu, 30min)
- CPTAC genomic data at the Genomics Data Commons (Ana Robles, 15min)
- Q&A (15min)
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