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title | Citations & Data AccessUsage Policy |
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| Citations & Data Access Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever. Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents. | Data Type | Download all or Query/Filter |
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Images (DICOM, 4.4 GB) | | Annotated Whole Slide Pathology Images (76.8 GB) | | Fused Rad-Path Matlab Files | | Please note that Box has a 15GB download limit, so you will need to download images in batches. Click the Versions tab for more info about data releases. Localtab |
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title | Detailed Description |
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| Usage Policy Tcia limited license policy |
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| Madabhushi, A., & Feldman, M. (2016). Fused Radiology-Pathology Prostate Dataset (Prostate Fused-MRI-Pathology) . The Cancer Imaging Archive. doi; 10.7937/k9/TCIA.2016.tlpmr1am |
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title | Publication Citation |
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| Singanamalli, A. , Rusu, M. , Sparks, R. E., Shih, N. N., Ziober, A. , Wang, L. , Tomaszewski, J. , Rosen, M. , Feldman, M. and Madabhushi, A. (2016), Identifying |
Detailed Description | | | Pathology Image Statistics |
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Modalities | MRI | Pathology, Matlab | Number of Patients | 28 | 16 | Number of Studies | 29 | N/A | Number of Series | 325 | N/A | Number of Images | 32,508 | 114 | Image Size (GB) | 4.4 | 76.8 | Supporting DocumentationThe data set is fully described in the following publications: Singanamalli, A, Sparks, R, Rusu, M, Shih, N, Ziober, A, Tomaszewski, J, Rosen, M, Feldman, M, Madabhushi, A, “Identifying in vivo DCE MRI markers associated with | Microvessel Architecture and Gleason Grades of Prostate Cancer—Preliminary Findings”, Journal of Magnetic Resonance Imaging, microvessel architecture and gleason grades of prostate cancer. J. Magn. Reson. Imaging, 43: 149-158. doi:10.1002/jmri.24975 | . [Epub ahead of print]
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title | Publication Citation |
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| Toth, R, Feldman, M, Yu, D, Tomaszewski, J, Madabhushi, A, | “Histostitcher™“Histostitcher™: An Informatics Software Platform for Reconstructing Whole-Mount Prostate Histology using the Extensible Imaging Platform (XIP™) Framework,” Journal of Pathology Informatics, vol. 5, pg. 8, 2014 (PMID: 24843820, PMCID: PMC4023035). https://doi.org/10.4103/2153-3539.129441 |
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title | Publication Citation |
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| Xiao, G, Bloch, N, Chappelow, J, Genega, E, Rofsky, N, Lenkinsky, R, Tomaszewski, J, Feldman, M, Rosen, M, Madabhushi, A, | “Determining “Determining Histology-MRI Slice Correspondences for Defining MRI-based Disease Signatures of Prostate Cancer,” Special Issue of Computerized Medical Imaging and Graphics on Whole Slide Microscopic Image Processing, vol. 35[7-8], pp. 568-78, 2011 (PMID: 21255974). https://doi.org/10.1016/j.compmedimag.2010.12.003 |
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title | Publication Citation |
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| Chappelow, J, Bloch, N., Rofsky, N, Genega, E, Lenkinski, R, DeWolf, W, Madabhushi, A, | “Elastic Pathology and Matlab DataReconstructed, annotated whole slide pathology as well as fused Rad-Path matlab objects are also available at “Elastic Registration of Multimodal Prostate MRI and Histology via Multi-Attribute Combined Mutual Information,” Medical Physics, vol. 38[4], pp. 2005-2018, 2011 (PMID: 21626933). | //pathology.cancerimagingarchive.netpathdata. Localtab |
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title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy This collection is freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. See TCIA's Data Usage Policies and Restrictions for additional details. Questions may be directed to help@cancerimagingarchive.net. Please be sure to include the following citations in your work if you use this data set: Info |
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| Madabhushi, A., & Feldman, M. (2016). Fused Radiology-Pathology Prostate Dataset. The Cancer Imaging Archive.http://doi.org/10.79371118/K9/TCIA.2016.TLPMR1AM1.3560879 |
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title | Publication Citation |
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| Info |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)DOI: https://doi.org/10.1007/s10278-013-9622-7 |
Other Publications Using This DataTCIA maintains a list of publications that which leverage our data. At this time we are not aware of any publications based on this data. If you have a publication you'd like to add, please contact the TCIA's Helpdesk. - Brunese, L., Mercaldo, F., Reginelli, A., & Santone, A. (2020). Formal methods for prostate cancer gleason score and treatment prediction using radiomic biomarkers. Magnetic resonance imaging, 66, 165-175. doi:https://doi.org/10.1016/j.mri.2019.08.030
- Chatzoudis, P. (2018). MRI prostate cancer radiomics: Assessment of effectiveness and perspectives. (Master of Biomedical Engineering). Delft University of Technology, Delft, Netherlands. Retrieved from http://resolver.tudelft.nl/uuid:b8459bdb-1761-4f17-8807-e3b1cf7da629
- Duran, A., Dussert, G., Rouviere, O., Jaouen, T., Jodoin, P. M., & Lartizien, C. (2022). ProstAttention-Net: A deep attention model for prostate cancer segmentation by aggressiveness in MRI scans. Medical image analysis, 77, 102347. doi:https://doi.org/10.1016/j.media.2021.102347
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Localtab |
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| Version 1 2 (Current) Updated 11-30-2016: Updated 2023/04/10Data Type | Download all or Query/Filter | License |
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Images (DICOM, 4.4 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/23691514/doiJNLP-auLIj9wT-Prostate_Fused-MRI-Pathologyv1.tcia?version=1&modificationDate=1534787026838&api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?CollectionCriteria=Prostate%20Fused-MRI-Pathology |
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| Prostate Fused-MRI-Pathology |
(Download requires the NBIA Data Retriever) | | Annotated Whole Slide Pathology Images & Annotations (Tiff, XML 76.8 GB) | Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6Ijc0NSIsInBhc3Njb2RlIjoiM2RmNWQwYjc5M2QzZGU0N2YwNTExOTc4YWFmNmFkNjBlMTYwMTA1YyIsInBhY2thZ2VfaWQiOiI3NDUiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:prostate_fused_mri_pathology |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | | Fused Rad-Path Matlab Files |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/23691514/fused_prostate_matlab.zip?version=1&modificationDate=1476802701461&api=v2 |
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| | Correspondence tables (XLSX) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/23691514/histo_MR_Correspondence.xlsx?api=v2 |
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Added a correspondence xlsx between MR and Pathology slides, imaging data are unchanged. Version 1: Updated 2016/11/30
Data Type | Download all or Query/Filter |
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Images (DICOM, 4.4 GB) |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/23691514/doiJNLP-auLIj9wT-Prostate_Fused-MRI-Pathologyv1.tcia?version=1&modificationDate=1534787026838&api=v2 |
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Tcia button generator |
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label | Search |
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url | https://nbia.cancerimagingarchive.net/nbia-search/?CollectionCriteria=Prostate%20Fused-MRI-Pathology |
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(Download requires the NBIA Data Retriever Image Removed Image Removed (Requires the NBIA Data Retriever.) | Annotated Whole Slide Pathology Images & Annotations (Tiff, XML 76.8 GB) |
Tcia button generator |
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url | https://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjUzNSIsInBhc3Njb2RlIjoiMGUwNWFjMmU0MWNkYWRmZTA1ZGYxNzZjNjRiMzM5MDc3OGNjMTI5MyIsInBhY2thZ2VfaWQiOiI1MzUiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0= |
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Tcia button generator |
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label | Search |
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url | https://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:prostate_fused_mri_pathology |
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(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) Image Removed | Fused Rad-Path MATLAB Files |
Tcia button generator |
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url | https://wiki.cancerimagingarchive.net/download/attachments/23691514/fused_prostate_matlab.zip?version=1&modificationDate=1476802701461&api=v2 |
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