Localtab |
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active | true |
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title | Data Access |
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| Data Access (Radiology)Access Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever . Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents Choosing the Download option will provide you with a file to launch the TCIA Download Manager to download the entire collection. If you want to browse or filter the data to select only specific scans/studies please use the Search option.
Data Type | Download all or Query/Filter |
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Images (DICOM, | xxxGB4.4 GB) | | Annotated Whole Slide Pathology Images & Annotations (Tiff, XML 76.8 GB) | | Fused Rad-Path Matlab Files | |
Please note that Box has a 15GB download limit, so you will need to download images in batches. Click the Versions tab for more info about data releases. Data Access (Pathology) Browse the table below to view reconstructed, annotated whole slide pathology as well as fused Rad-Path matlab objects. https://pathology.cancerimagingarchive.net/pathdata/ HTML |
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<iframe src="https://pathology.cancerimagingarchive.net/pathdata/" width="500" height="500"></iframe> |
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Localtab |
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title | Detailed Description |
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| Detailed Description
| Pathology Image Statistics |
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Modalities | MRI | Pathology, | Path, Patients 325 | N/A | Number of Images | 32,508 |
Supporting DocumentationThe dataset data set is most fully described in detail in Info |
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| | the following publications: - Singanamalli, A. , Rusu, M. , Sparks, R. E., Shih, N. N., Ziober, A. , Wang, L. , Tomaszewski, J. , Rosen, M. , Feldman, M. and Madabhushi, A. (2016), Identifying in vivo DCE MRI markers associated with microvessel architecture and gleason grades of prostate cancer. J. Magn. Reson. Imaging, 43: 149-158. doi: 10.1002/jmri.24975 (PMID:26110513).
- Toth, R, Feldman, M, Yu, D, Tomaszewski, J, Madabhushi, A, “Histostitcher™: An Informatics Software Platform for Reconstructing Whole-Mount Prostate Histology using the Extensible Imaging Platform (XIP™) Framework,” Journal of Pathology Informatics, vol. 5, pg. 8, 2014 (PMID: 24843820, PMCID: PMC4023035).
- Xiao, G, Bloch, N, Chappelow, J, Genega, E, Rofsky, N, Lenkinsky, R, Tomaszewski, J, Feldman, M, Rosen, M, Madabhushi, A, “Determining Histology-MRI Slice Correspondences for Defining MRI-based Disease Signatures of Prostate Cancer,” Special Issue of Computerized Medical Imaging and Graphics on Whole Slide Microscopic Image Processing, vol. 35[7-8], pp. 568-78, 2011 (PMID: 21255974).
- Chappelow, J, Bloch, N., Rofsky, N, Genega, E, Lenkinski, R, DeWolf, W, Madabhushi, A, “Elastic Registration of Multimodal Prostate MRI and Histology via Multi-Attribute Combined Mutual Information,” Medical Physics, vol. 38[4], pp. 2005-2018, 2011 (PMID: 21626933).
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Localtab |
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title | Citations & Data Usage Policy |
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| Citations & Data Usage Policy This collection is freely available to browse, download, and use for commercial, scientific and educational purposes as outlined in the Creative Commons Attribution 3.0 Unported License. See TCIA's Data Usage Policies and Restrictions for additional details. Questions may be directed to help@cancerimagingarchive.net. Please be sure to include the following citations in your work if you use this data set: Public collection license |
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Info |
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| Madabhushi, A., & Feldman, M. (2016). Fused Radiology-Pathology Prostate Dataset . The Cancer Imaging Archive. doi; 10.7937/K9/TCIA.2016.TLPMR1AM |
Info |
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title | Publication Citation |
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| - Singanamalli, A. , Rusu, M. , Sparks, R. E., Shih, N. N., Ziober, A. , Wang, L. , Tomaszewski, J. , Rosen, M. , Feldman, M. and Madabhushi, A. (2016), Identifying in vivo DCE MRI markers associated with microvessel architecture and gleason grades of prostate cancer. J. Magn. Reson. Imaging, 43: 149-158. doi: 10.1002/jmri.24975
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Info |
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title | Publication Citation |
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- (PMID:26110513).
- Toth, R, Feldman, M, Yu, D, Tomaszewski, J, Madabhushi, A, “Histostitcher™: An Informatics Software Platform for Reconstructing Whole-Mount Prostate Histology using the Extensible Imaging Platform (XIP™) Framework,” Journal of Pathology Informatics, vol. 5, pg. 8, 2014 (PMID: 24843820, PMCID: PMC4023035).
- Xiao, G, Bloch, N, Chappelow, J, Genega, E, Rofsky, N, Lenkinsky, R, Tomaszewski, J, Feldman, M, Rosen, M, Madabhushi, A, “Determining Histology-MRI Slice Correspondences for Defining MRI-based Disease Signatures of Prostate Cancer,” Special Issue of Computerized Medical Imaging and Graphics on Whole Slide Microscopic Image Processing, vol. 35[7-8], pp. 568-78, 2011 (PMID: 21255974). https://doi.org/10.1016/j.compmedimag.2010.12.003
- Chappelow, J, Bloch, N., Rofsky, N, Genega, E, Lenkinski, R, DeWolf, W, Madabhushi, A, “Elastic Registration of Multimodal Prostate MRI and Histology via Multi-Attribute Combined Mutual Information,” Medical Physics, vol. 38[4], pp. 2005-2018, 2011 (PMID: 21626933).
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Info |
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| Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper) |
Other Publications Using This DataTCIA maintains a list of publications which that leverage our data. At this time we are not aware of any publications based on this data. If you have a publication you'd like to add, please contact the TCIA Helpdesk.
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Localtab |
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| Version 1 (Current) Updated 11-30-2016
Data Type | Download all or Query/Filter |
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Images (DICOM, 4.4 GB) | | Annotated Whole Slide Pathology Images & Annotations (Tiff, XML 76.8 GB) | | Fused Rad-Path MATLAB Files | |
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