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Purpose of this Guide
The This guide explains the advanced features of the National Biomedical Imaging Archive (NBIA) REST APIs allow you to access the search and download functions used in the TCIA Rdiology Portal. The NBIA Advanced REST APIs , described on this page, provide capabilities to access restricted collections, which require login authentication. They also provide advanced features that are geared towards developers seeking to integrate searching and downloading TCIA data into their own web and desktop applications.
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NBIA Advanced REST API Base URL, Format, and Return Values
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The full API for data structure consists of a base URL followed by the API and query parameters, in that order. The base URL to access NBIA Advanced REST API data is https://services.cancerimagingarchive.net/nbia-api/services.
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To access National Lung Screening Trial (NLST) data, get the authentication token from https://nlst.cancerimagingarchive.net/nbia-api/oauth/token, then use https://nlst.cancerimagingarchive.net/nbia-api/services/ to make REST API calls. |
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| title | NBIA Advanced REST API Query Structure |
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<Token><BaseURL><Resource><QueryEndpoint>?<QueryParameters> |
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For example, the AP
I shown below requests all Body Part Values and Counts for the PT modality.
Note: To accommodate special characters in passwords, use double quotes on Windows and single quotes on Mac and Linux.
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We can break this down as follows.
| Object | Example |
|---|---|
| Access Token | cd2b2895-85d0-49c5-bd75-804f162da942 |
| BaseURL | |
| Resource | /nbia-api/services |
| Endpoint | getBodyPartValuesAndCounts |
| Query Parameters | Modality=PT |
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All APIs return results in JSON format except for the Thumbnail API (JPG), Manifest Text API (TXT), and Series Metadata 2 API (CSV).
Secure Access to NBIA REST Services
Access to any NBIA Advanced REST API requires a token that you must request.
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This token can then be used on subsequent requests to authorize access to resources. This token will expire in two hours but you can refresh it.
The NBIA REST API supports secure access to private data in the Client Credentials authorization flow with Spring Security and OAuth2. The Client Credentials authorization flow is also known as "signed fetch" or 2-legged OAuth. The following figure illustrates the typical use case for REST API calls made on the web using 2-legged OAuth. For more information regarding the specific workflow, consult the OAuth2 Specification.
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Figure 1: Client Credentials Flow
This flow includes the following steps:
- The client authenticates with the authorization server and requests an access token from the token endpoint.
- The authorization server authenticates the client, and if valid, issues an access token.
This token can then be used on subsequent requests to authorize access to resources. The NBIA Advanced REST API server also supports token expiration and extension by refresh. The time it takes tokens to expire is currently two hours but is configurable.
To access TCIA using an NBIA Advanced REST API, you must do the following:
Requesting a Token
Access to any NBIA Advanced REST API requires an authentication token.
Requesting a Token
Access to any NBIA Advanced REST API requires an access token. A request for an access token takes the following structure. Note that USER should be your TCIA username and PASSWORD should be your TCIA password.
Note: To accommodate special characters in passwords, use double quotes on Windows and single quotes on Mac and LinuxA request for a token takes the following structure. Note that USERNAME should be your TCIA username and PASSWORD should be your TCIA password.
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curl -v -d "username=USERNAMEUSER&password=PASSWORD&client_id=NBIA&grant_type=password" -X POST -k https://services.cancerimagingarchive.net/nbia-api/oauth/token |
Request a token by interacting with the application in the following way.
- The application requests credentials. The credentials you pass are different depending on if you want to access public or restricted data (see above).
The application sends a request to the service using the credentials you provided as a query string for the body.
- grant_type=password
- username
- password
The service responds with access token details and expiration information.
- access_token
- expires_in
- token_type
The application makes a request for resources using the returned access token. All APIs listed for accessing public data also support secure access to restricted data with an additional parameter for the access token.
Requesting a Token to Use with Public Data
If you don't have a TCIA account and want to test an API on this page, you can access public data using the NBIA guest account with no password, as follows.
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curl -d "username=nbia_guest&password=&client_id=NBIA&grant_type=password" -X POST -k https://services.cancerimagingarchive.net/nbia-api/oauth/token |
How a Token is Returned/Granted/Given
A successful token request returns a standard access token in JSON format. The value after "access_token" will likely be longer than this example.
If you don't have a TCIA account, you can access public data using the "nbia_guest" account with no password, as follows.
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curl -v -d "username=nbia_guest&password=&client_id=NBIA&grant_type=password" -k https://services.cancerimagingarchive.net/nbia-api/oauth/token |
How a Token is Returned/Granted/Given
A successful token request returns a standard access token in JSON format. The value after "access_token" will be longer than this example.
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{"access_token":"cd2b2895-85d0-49c5-bd75-804f162da942","expires_in":7200,"refresh_expires_in":7200,"refresh_token":" | ||
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{"access_token":"cd2b2895-85d0-49c5-bd75-804f162da942","expires_in":7200,"refresh_expires_in":7200,"refresh_token":"eyJhbGciOiJIUzI1NiIsInR5cCIgO","not-before-policy":0,"session_state":"92a199c6-84ed-48aa-a0d2-059bbb99bc90","scope":"openid profile email"} |
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# Request for modality values and counts curl -H "Authorization:Bearer cd2b2895-85d0-49c5-bd75-804f162da942" -k "https://services.cancerimagingarchive.net/nbia-api/services/getModalityValuesAndCounts?Collection=LIDC-IDRI" |
A successful service request returns the value in a defined format.
Refreshing the Token
The time it takes tokens to expire is configurable but is currently two hoursYou can refresh your access token for an additional two hours by passing the refresh token from your original token request.
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# Request for refreshing the token curl -X -v -d "refresh_token=7c2414a1-1f2f-4c9e-82a0-69fcb9fd18ed& "client_id=nbiaRestAPIClient&client_secret=ItsBetweenUAndMe&nbia&grant_type=refresh_token&refresh_token=YOUR_REFRESH_TOKEN" -X POST -k https://servicesnbia.cancerimagingarchive.net/nbia-api/oauth/token/nbia-api/oauth/token" |
In the following result, 119 is 7200 is the seconds before the token expires.
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{"access_token":"YOUR_ACCESS_TOKEN","expires_in":7200,"refresh_expires_in":7200,"refresh_token":"bbe4aa2c-7235-41ad-9770-31619d3dbd15YOUR_REFRESH_TOKEN","token_type":"bearerBearer","refreshid_token":"671bb72b-f929-4ef5-a4d7-b52341a6007a","expires_in":119}YOUR_ID_TOKEN","not-before-policy":0,"session_state":"531425b6-425d-44f8-bc74-41200d6803c0","scope":"openid profile email"} |
Logging Out
The following is an example request to log out. Logging out invalidates the token you previously requested.
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# Request for logout curl curl -H-X -v -d "Authorization:Bearer caa278aa-e7a9-45b8-a7ec-2c83d4b03cc0YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/logout" |
If successful, the request returns the following text.
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You Have Logged Out successfully. |
REST Advanced REST APIs
The TCIA Radiology Portal’s search features use the following Advanced REST APIs.
If the value for an attribute is null in the specified collection, it will not appear in the returned values.
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Body Part Values and Counts API
The Body Part Values and Counts API returns the modality values and body part count for the modality. It optionally takes the following parameters.
- Collection
- Modality
Example Body Part Values and Counts Query
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| title | Sample Call |
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The request does not return any values.
Accessing the National Lung Screening Trial (NLST) collection
Due to its size, the National Lung Screening Trial (NLST) collection lives on a separate NBIA server. Since this server only holds the public NLST collection, there is no reason to create an API token with your own credentials. To access these data via the Advanced REST API, you must change the URL to obtain the authentication token from https://nlst.cancerimagingarchive.net/nbia-api/oauth/token. You can then use https://nlst
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.cancerimagingarchive.net/nbia-api/services/
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Sample Results
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to make REST API calls. In both cases, the beginning of the URL is changed from "services" to "nlst." Examples of requesting a token and performing an API query are shown below:
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curl -X -v -d "username=nbia_guest&password=&client_id=NBIA&grant_type=password" -X POST -k https://nlst.cancerimagingarchive.net/nbia-api/oauth/token |
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curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://nlst.cancerimagingarchive.net/nbia-api/services/getBodyPartValuesAndCounts?Modality=PT" |
Advanced REST APIs
The TCIA Radiology Portal’s search features use the following Advanced REST APIs.
| Query Name | Return Values | Query Parameters |
|---|---|---|
| Body Part Values and Counts | Modality values and body part count for the modality API example and return values for getBodyPartValuesAndCounts | Collection (O) Modality (O) |
| Collection Descriptions | The collection's description | collectionName (O) |
| Collection or Series for DOI | The collection and/or series with the Digital Object Identifier (DOI) API example and return values for getCollectionorSeriesforDOI | DOI (R) CollectionOrSeries (O) - if left empty, only collection names and third party analysis are returned. If set to "series" a full list of Series Instance UIDs associated with each collection are also returned. |
| Collection Values and Counts | The collections and the subject count for the collection API example and return values for getCollectionValuesandCounts | |
| Create Saved Cart | Creates a saved cart (list) API example and return values for Create Saved Cart (createSharedList) | list - A repeatable parameter for each series you wish to have in the saved cart name- Name for the saved cart (note that names of saved carts must be unique) description - Description of the saved cart url - URL of the saved cart |
| DICOM Metadata by Series UID | Provides the functionality in the portal where the DICOM data is retrieved from a series | SeriesUID |
| Extended Simple Search with Modality and Body Part Paged | API example and return values for getSimpleSearchWithModalityAndBodyPartPaged |
|
| Image with MD5 Hash | Zip file with the images and a CSV file containing the MD5 hashes | SeriesInstanceUID |
| Manifest for Simple Search | The Manifest Text for Simple Search API allows the creation of a manifest file that can be used to execute the NBIA Data Retriever. API example and return values for getManifestForSimpleSearch | The API takes the same arguments as the Simple Search GUI. |
| Manifest Text | The Manifest Text API allows the creation of a manifest file that can be used to execute the NBIA Data Retriever. |
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| Manifest for Text Search | Generates a manifest file of series. This is an API version of the text search in the NBIA Radiology Portal GUI. See Performing a Text Search for more information. |
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| Manifest from Patient Study Series | A manifest file of patient IDs that match the input parameters API example and return values for getManifestfromPatientStudySeries | patientIDs (O) studyUIDs (O) seriesUIDs (O) anyOrAll (O) includeAnnotation (O) |
| MD5 Hierarchy | API example and return values for getMD5Hierarchy | SeriesInstanceUID (O) StudyInstanceUID (O) PatientID (O) Collection (O) |
| Manufacturer Values and Counts | The manufacturer and their counts API example and return values for getManufacturerValuesandCounts | |
| MD5 Hash for Image | The API returns a zip file containing the DICOM images and a CSV file with the MD5 hash code for each image file. | |
| Modality Values and Counts | The modality values plus the manufacturer count for the modality API example and return values for getModalityValuesandCounts | Collection (O) Modality (O) Body Part Examined (O) |
| Restrictions for Simple Search | API example and return values for getRestrictionsforSimpleSearch | |
| Series Metadata 2 | The Series Metadata API allows returns the metadata needed by the client for a set of series as CSV. | list- Comma-separated list of series to return (R) SeriesInstanceUID (R) Collection (O) 3rd Party Analysis Data (O) Data Description URI (O) Subject ID (O) Study UID (O) Study Description (O) Study Date (O) Series Description (O) Manufacturer (O) Modality (O) SOP Class UID (O) Number of Images (O) File Size (O) File Location (O) Series Number (O) License Name (O) License URL (O) Annotation Size (O) Date Released (O) Series Date (O) Protocol Name (O) Body Part Examined (O) Annotations Flag (O) Manufacturer Model Name (O) Software Versions (O) Time Stamp (O) |
| Species Tax | API example and return values for getSpeciesTax | |
| Species Values And Counts | API example and return values for getSpeciesValuesAndCounts | |
| Study Drill Down With Series IDs | API example and return values for getStudyDrillDownWithSeriesIDs | |
| Thumbnail | API example and return values for getThumbnail | |
| Text Search | API example and return values for getTextSearch | |
| Updated Series | API example and return values for getUpdatedSeries |
Return Values
If the value for an attribute is null in the specified collection, it will not appear in the returned values.
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Body Part Values and CountsExample Body Part Values and Counts | Sample Return Value | |||
[
{"criteria":"ABDOMEN","count":"13"},
{"criteria":"CHEST","count":"298"},
{"criteria":"Chest","count":"1"},
{"criteria":"HEADNECK","count":"1"},{
"criteria":"Lung","count":"76"},
{"criteria":"THORAX_1_ROUTINE","count":"1"}
] |
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curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getCollectionDescriptions?collectionName=Anti-PD-1_Lung"
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If successful, the API returns the collection description.
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[{"description":"<p>\n\t<span class=\"conf-macro output-inline\" data-hasbody=\"true\" data-macro-name=\"excerpt\">This collection includes 46 lung cases treated with <span style=\"color: rgb(23,43,77);\">anti-PD1 immunotherapy</span> in 2016, each with pre-treatment imaging (CT,PT,SC) and most with 1 imaging follow-up timepoint.</span></p>\n<p>\n\t<span _ngcontent-cmj-c43=\"\" class=\"toolTip step show\" style=\"top: 1196.5px;\"><span _ngcontent-cmj-c43=\"\">Please see the <a href=\"https://doi.org/10.7937/tcia.2019.zjjwb9ip\">Anti-PD-1_Lung</a> wiki page to learn more about the images and to obtain any supporting metadata for this collection.</span></span></p>\n","id":700088325,"collectionDescTimestamp":null,"collectionName":"Anti-PD-1_Lung","userName":null,"licenseId":null,"descriptionURI":null}] |
Collection or Series for DOI
The Collection or Series for DOI API returns the collection and/or series with the Digital Object Identifier (DOI). It does not take any parameters.
Example getCollectionOrSeriesForDOI Query
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curl -H "YOUR_TOKEN" -k "https://imaging-qacm.nci.nih.gov/nbia-api/services/getCollectionOrSeriesForDOI" -d "DOI=https://doifor-CBIS-DDSM&CollectionOrSeries=collection" |
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[\{"collection":"CBIS-DDSM","seriesInstanceUID":null,"thirdPartyAnanlysis":null}] |
Collection Values and Counts
The Collection Values and Counts API returns the collections and the subject count for the collection.
Example Collection Values And Counts Query
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curl -H "YOUR_TOKEN" -k “https://services.cancerimagingarchive.net/nbia-api/services/getCollectionValuesAndCounts" -d "criteriaType0=CollectionCriteria&value0=CBIS-DDSM" |
The API returns the collections with their counts.
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[
{"criteria":"IDRI","count":"614"},
{"criteria":"IDRICONDUIT","count":"66"},
{"criteria":"LIDC","count":"397"},
{"criteria":"RIDER Pilot","count":"130"},
{"criteria":"SportInjury","count":"1"}
] |
Create Saved Cart API
The Create Saved Cart API allows the creation of a saved cart.
The API takes four arguments:
- list - A repeatable parameter for each series you wish to have in the saved cart
- name- Name for the saved cart (note that names of saved carts must be unique)
- description - Description of the saved cart
- url - URL of the saved cart
Example Create Saved Cart Query
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curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/createSharedList" -d "list=88.8.133841977708353813381069288155921822331&list=88.8.326983478845196402838719404831299211067&name=scottslist&description=mydescription&url=testurl" |
DICOM Metadata by Series UID API
The DICOM Metadata by Series UID API provides the functionality in the portal where the DICOM data is retrieved from a series.
The API takes one argument:
- SeriesUID
The SeriesUID is available from the Drill Down API call.
Example Metadata Query
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C:\curl>curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getDicomTags?SeriesUID=9999.266036705757333804188405684898037929022 |
The API sends back triples of all DICOM element, name, data in the file.
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[
{"element":"(0002,0001)","name":"File Meta Information Version","data":"00\\01"},
{"element":"(0002,0002)","name":"Media Storage SOP Class UID","data":"1.2.840.10008.5.1.4.1.1.2"}
................................... |
Extended Simple Search with Modality and Body Part Paged API
The Extended Simple Search with Modality and Body Part Paged API is used to run queries for the Simple Search GUI in the NBIA client. This API uses a variety of criteria as seen in the NBIA client, as well as the pages of data the client requests. The available criteria types and their components follow. Since the simple search can take an unlimited number of criteria each of the criteria items is appended with a number signifying its order in the query, starting with 0.
- CollectionCriteria
- value
- ImageModalityCriteria
- value
- AnatomicalSiteCriteria
- value
- ManufacturerCriteria
- value
- DateRangeCriteria
- fromDate - Formatted "dd/mm/yyyy"
- toDate - Formatted "dd/mm/yyyy"
- PatientCriteria
- value
- MinNumberOfStudiesCriteria
- value
- SpeciesCriteria
- The code for the species
- PhantomCriteria
- yes for phantoms
- TimePointCriteria
- eventType the eventType for the timepoint
- fromDate - Formatted "dd/mm/yyyy"
- toDate - Formatted "dd/mm/yyyy"
- SortField
- The field to sort on
- SortDirection
- ascending or descending
- Start
- The page to start on
- Size
- How many items per page
Query
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curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getSimpleSearchWithModalityAndBodyPartPaged" -d "criteriaType0=TimePointCriteria&eventType0=DIAGNOSIS&fromDay0=-5&toDay0=10&sortField=subject&sortDirection=descending&start=0&size=9" |
getBodyPartValuesAndCounts?Modality=PT" |
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{ "resultSet":[ { "subjectId"criteria":"Test-5910936489ABDOMEN", "project"count":"Test13"}, "id":819200, "modalities":[ "CT" ], "bodyParts":[ "LUNG" ], "species":[ "L-877FC" ], "timepoints":{ "DIAGNOSIS":[ 1, 3 ] }, "totalNumberOfStudies":28, "totalNumberOfSeries":61, "studyIdentifiers":[ { "seriesIdentifiers":[ 917526, 917527, 917528 ], "seriesAndModality":[ ], "studyIdentifier":851979 }, { "seriesIdentifiers":[ 917529, 917530 ], "seriesAndModality":[ ], "studyIdentifier":851980 }, { "seriesIdentifiers":[ 917531, 917532 ], "seriesAndModality":[ ], "studyIdentifier":851981 } ] } ], "totalPatients":1, "bodyParts":[ { "value":"LUNG", "count":1 } ], "modalities":[ { "value":"CT", "count":1 } ], "collections":[ { "value":"Test", "count":1 } ], "species":[ { "value":"L-877FC", "count":1 } ], "maxTimepoints":{ "DIAGNOSIS":3 }, "minTimepoints":{ "DIAGNOSIS":1 }, "sort":"subject-descending" } |
Image with MD5 Hash API
This API takes a series UID and returns a zip file with the images and a CSV file containing the MD5 hashes.
The API takes two arguments:
- Collection - The collection to update
- DOI - Digital Object Identifier
Example Image with MD5 Hash Query
{"criteria":"CHEST","count":"298"},
{"criteria":"Chest","count":"1"},
{"criteria":"HEADNECK","count":"1"},{
"criteria":"Lung","count":"76"},
{"criteria":"THORAX_1_ROUTINE","count":"1"}
] |
Collection Descriptions
Example getCollectionDescriptions Query
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|---|---|---|
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curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getCollectionDescriptions?collectionName=4D-Lung" |
| Code Block | ||
|---|---|---|
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[{"description":"<p>\n\t<span>This data collection consists of images acquired during chemoradiotherapy of 20 locally-advanced, non-small cell lung cancer patients. The images include four-dimensional (4D) fan beam (4D-FBCT) and 4D cone beam CT (4D-CBCT). All patients underwent concurrent radiochemotherapy to a total dose of 64.8-70 Gy using daily 1.8 or 2 Gy fractions.</span></p>\n<p>\n\tA single Radiation Oncologist delineated targets and organs at risk in all 4D-FBCT and a limited number of 4D-CBCT images. All patients underwent concurrent radiochemotherapy to a total dose of 64.8-70 Gy using daily 1.8 or 2 Gy fractions.</p>\n<p>\n\tPlease see the <a href=\"http://doi.org/10.7937/K9/TCIA.2016.ELN8YGLE\" target=\"_blank\">4D-Lung</a> page to learn more about the images and to obtain any supporting metadata for this collection.</p>\n","id":236322816,"collectionDescTimestamp":1678942800000,"collectionName":"4D-Lung","userName":"tracyn","licenseId":null,"descriptionURI":"https://doi.org/10.7937/K9/TCIA.2016.ELN8YGLE"}] |
Collection or Series for DOI
Example getCollectionOrSeriesForDOI Query for Collection
| Code Block | ||
|---|---|---|
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curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getCollectionOrSeriesForDOI" -d "DOI=https://doi.org/10.7937/K9/TCIA.2016.ELN8YGLE&CollectionOrSeries=collection" |
Example getCollectionOrSeriesForDOI Query for Series
| Code Block |
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curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getCollectionOrSeriesForDOI" -d "DOI=https://doi.org/10.7937/K9/TCIA.2016.ELN8YGLE&CollectionOrSeries=series" |
Return Value for Collection
| Code Block | ||
|---|---|---|
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[{""collection"":""4D-Lung"",""seriesInstanceUID"":null,""thirdPartyAnanlysis"":null}] |
Return Value for Series
| Code Block | ||
|---|---|---|
[{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100037757822547877540622085093"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100049789635984645130991826991"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100055011459662871005613719886"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100089621274100103247029607723"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3. | ||
| Code Block | ||
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curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/v2/getImageWithMD5Hash?SeriesInstanceUID=1.3.6.1.4.1.14519.5.2.1.69196834.4624.313514201353787659031503464798" |
The API returns the images and a CSV file in the zip file that records the file name and a hash.
Manifest for Simple Search API
The Manifest Text for Simple Search API allows the creation of a manifest file that can be used to execute the NBIA Data Retriever.
The API takes the same arguments as the Simple Search GUI.
Example Manifest for Simple Search Query
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|---|---|---|
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curl -H "YOUR_TOKEN" -k "https://localhost:8080/nbia-api/services/getManifestForSimpleSearch" -d "criteriaType0=ThirdPartyAnalysis&value0=yes&sortField=subject&sortDirection=descending&start=0&size=1000000" |
The API returns text that can be used as a manifest file for the NBIA Data Retriever.
| Code Block | ||
|---|---|---|
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downloadServerUrl=https://imaging-devcm.nci.nih.gov/nbia-download/servlet/DownloadServlet includeAnnotation=false noOfrRetry=4 databasketId=manifest-1523866570303.tcia manifestVersion=3.0 ListOfSeriesToDownload= 5010.100137773791956790807544371448"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.9328.50.3.336 |
Manifest Text API
The Manifest Text API allows the creation of a manifest file that can be used to execute the NBIA Data Retriever.
The API takes two arguments:
- list - A repeatable parameter of series UIDs for each series you want to download
- includeAnnotation - If "true" is used, the annotations are returned.
14519.5.2.1.6834.5010.100317870572035759487319851556"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100356687286872672203671297553"",""thirdPartyAnanlysis"":null},......." |
Collection Values and Counts
Example Collection Values And Counts Query
Example Manifest Query| Code Block | ||
|---|---|---|
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curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getManifestTextV2" -d "list=1.3.6.1.4.1.9328.50.3.336&includeAnnotation=false" |
getCollectionValuesAndCounts" |
| Code Block | ||
|---|---|---|
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[
{"criteria":"IDRI","count":"614"},
{"criteria":"IDRICONDUIT","count":"66"},
{"criteria":"LIDC","count":"397"},
{"criteria":"RIDER Pilot","count":"130"},
{"criteria":"SportInjury","count":"1"}
] |
Create Saved Cart
Example Create Saved Cart Query
| Code Block | ||
|---|---|---|
| ||
downloadServerUrl=https://imaging-devcm.nci.nih.gov/nbia-download/servlet/DownloadServlet
includeAnnotation=false
noOfrRetry=4
databasketId=manifest-1523866570303.tcia
manifestVersion=3.0
ListOfSeriesToDownload=
1.3.6.1.4.1.9328.50.3.336 |
Manifest for Text Search
This API takes a text value and generates a manifest file of series. This is an API version of the text search in the NBIA Radiology Portal GUI. See Performing a Text Search for more information.
This API takes the following parameter:
- textValue
Example getManifestForTextSearch Query
| ||
curl -H "Authorization:Bearer YOUR_ACCESS | ||
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -Xk POST "https://services.cancerimagingarchive.net/nbia-api/services/getManifestForTextSearchcreateSharedList" -d "textValue=CT"list=1.3.6.1.4.1.14519.5.2.1.6834.5010.100089621274100103247029607723&name=MyNewShareList&description=mysharelistdescription&url=https://myurl.com" NOTE: list=<seriesInstanceUID> |
DICOM Metadata by Series UID
The SeriesUID is available from the Drill Down API call.
Example Metadata Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k " | ||
| Code Block | ||
| ||
downloadServerUrl=https://services.cancerimagingarchive.net/nbia-downloadapi/servlet/DownloadServlet includeAnnotation=false noOfrRetry=4 databasketId=manifest-1680987888150.tcia manifestVersion=3.0 ListOfSeriesToDownload= services/getDicomTags?SeriesUID=1.3.6.1.4.1.932814519.505.42.563784 1.36834.6.1.4.1.9328.50.4.568673 1.3.6.1.4.1.9328.50.4.568676 1.3.6.1.4.1.9328.50.4.568678 5010.100089621274100103247029607723" |
The API sends back triples of all DICOM element, name, data in the file.
| Code Block | ||
|---|---|---|
| ||
{"element":"(0027,1047)","name":"","data":"1.0"},{"element":"(0027,1050)","name":"","data":"0.0"},{"element":"(0027,1051)","name":"","data":"0.0"},{"element":"(0028,0002)","name":"Samples per Pixel","data":"1"},{"element":"(0028,0004)","name":"Photometric Interpretation","data":"MONOCHROME2"},{"element":"(0028,0010)","name":"Rows","data":"512"},{"element":"(0028,0011)","name":"Columns","data":"512"},{"element":"(0028,0030)","name":"Pixel Spacing","data":"0.878906\\0.878906"},{"element":"(0028,0100)","name":"Bits Allocated","data":"16"},{"element":"(0028,0101)","name":"Bits Stored","data":"16"},{"element":"(0028,0102)","name":"High Bit","data":"15"},{"element":"(0028,0103)","name":"Pixel Representation","data":"1"},{"element":"(0028,0120)","name":"Pixel Padding Value","data":"-2000"},{"element":"(0028,0303)","name":"Longitudinal Temporal Information Modified","data":"MODIFIED"},{"element":"(0028,1050)","name":"Window Center","data":"40"},{"element":"(0028,1051)","name":"Window Width","data":"400"},{"element":"(0028,1052)","name":"Rescale Intercept","data":"0"},{"element":"(0028,1053)","name":"Rescale Slope","data":"1"},{"element":"(0028,1054)","name":"Rescale Type","data":"HU"},{"element":"(0040,0244)","name":"Performed Procedure Step Start Date","data":"19950522"},{"element":"(0040,0245)","name":"Performed Procedure Step Start Time","data":"161702"},{"element":"(0040,0254)","name":"Performed Procedure Step Description","data":"4dct stereo"},{"element":"(0043,0010)","name":"","data":"GEMS_PARM_01"},{"element":"(0043,1010)","name":"","data":"400"},{"element":"(0043,1012)","name":"","data":"99\\99\\99"},{"element":"(0043,1016)","name":"","data":"0"},{"element":"(0043,101E)","name":"","data":"0.000000"},{"element":"(0043,101F)","name":"","data":"0"},{"element":"(0043,1021)","name":"","data":"0"},{"element":"(0043,1025)","name":"","data":"0\\0\\0\\0\\0\\0"},{"element":"(0043,1026)","name":"","data":"0\\0\\0\\0\\0\\0\\0\\0"},{"element":"(0043,1027)","name":"","data":""},{"element":"(0043,102B)","name":"","data":"2\\0\\0\\0"},{"element":"(0043,1031)","name":"","data":"0.000000\\0.000000"},{"element":"(0043,1040)","name":"","data":"353.85443"},{"element":"(0043,1041)","name":"","data":"3600.8787"},{"element":"(0043,1042)","name":"","data":"0"},{"element":"(0043,1043)","name":"","data":"0"},{"element":"(0043,1044)","name":"","data":"0"},{"element":"(0043,1045)","name":"","data":"0"},{"element":"(0043,1046)","name":"","data":"0"},{"element":"(0043,104D)","name":"","data":"0.0"},{"element":"(0043,104E)","name":"","data":"5.00122"},{"element":"(0045,0010)","name":"","data":"GEMS_HELIOS_01"},{"element":"(0045,1001)","name":"","data":"8"},{"element":"(0045,1002)","name":"","data":"2.5"},{"element":"(0045,1003)","name":"","data":"7"},{"element":"(0045,1004)","name":"","data":"6"},{"element":"(0045,1006)","name":"","data":"INTO GANTRY"},{"element":"(0045,1007)","name":"","data":"0.0"},{"element":"(0045,1008)","name":"","data":"0"},{"element":"(0045,1009)","name":"","data":"17"},{"element":"(0045,100A)","name":"","data":"0.0"},{"element":"(0045,100B)","name":"","data":"0.0"},{"element":"(0045,100C)","name":"","data":"0"},{"element":"(0045,100D)","name":"","data":"0"},{"element":"(0045,100E)","name":"","data":"0.0"},{"element":"(0045,100F)","name":"","data":"0.0"},{"element":"(0045,1010)","name":"","data":"0"},{"element":"(0045,1011)","name":"","data":"0"},{"element":"(0045,1012)","name":"","data":"0"},{"element":"(0045,1013)","name":"","data":"10"},{"element":"(0045,1014)","name":"","data":"0"},{"element":"(0045,1015)","name":"","data":"0"},{"element":"(0045,1016)","name":"","data":"0"},{"element":"(0045,1017)","name":"","data":"0"},{"element":"(0045,1018)","name":"","data":"0"},{"element":"(0045,1021)","name":"","data":"0"},{"element":"(0045,1022)","name":"","data":"0"},{"element":"(0045,1032)","name":"","data":"0.5"}] |
Extended Simple Search with Modality and Body Part Paged
The Extended Simple Search with Modality and Body Part Paged API is used to run queries for the Simple Search GUI in the NBIA client. This API uses a variety of criteria as seen in the NBIA client, as well as the pages of data the client requests. The available criteria types and their components follow. Since the simple search can take an unlimited number of criteria, each of the criteria items is appended with a number signifying its order in the query, starting with 0.
Example Extended Simple Search with Modality and Body Part Paged Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getSimpleSearchWithModalityAndBodyPartPaged" -d "criteriaType0=TimePointCriteria&eventType0=DIAGNOSIS&fromDay0=-5&toDay0=10&sortField=subject&sortDirection=descending&start=0&size=9" |
The API returns the results of the search.
| Code Block | ||
|---|---|---|
| ||
{
"resultSet":[
{
"subjectId":"Test-5910936489",
"project":"Test",
"id":819200,
"modalities":[
"CT"
],
"bodyParts":[
"LUNG"
],
"species":[
"L-877FC"
],
"timepoints":{
"DIAGNOSIS":[
1,
3
]
},
"totalNumberOfStudies":28,
"totalNumberOfSeries":61,
"studyIdentifiers":[
{
"seriesIdentifiers":[
917526,
917527,
917528
],
"seriesAndModality":[
],
"studyIdentifier":851979
},
{
"seriesIdentifiers":[
917529,
917530
],
"seriesAndModality":[
],
"studyIdentifier":851980
},
{
"seriesIdentifiers":[
917531,
917532
],
"seriesAndModality":[
],
"studyIdentifier":851981
}
]
}
],
"totalPatients":1,
"bodyParts":[
{
"value":"LUNG",
"count":1
}
],
"modalities":[
{
"value":"CT",
"count":1
}
],
"collections":[
{
"value":"Test",
"count":1
}
],
"species":[
{
"value":"L-877FC",
"count":1
}
],
"maxTimepoints":{
"DIAGNOSIS":3
},
"minTimepoints":{
"DIAGNOSIS":1
},
"sort":"subject-descending"
} |
Image with MD5 Hash
Example Image with MD5 Hash Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN” -k "https://public.cancerimagingarchive.net/nbia-api/services/v2/getImageWithMD5Hash?SeriesInstanceUID=1.3.6.1.4.1.14519.5.2.1.6834.5010.100089621274100103247029607723" |
Manifest for Simple Search
Example Manifest for Simple Search Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getManifestForSimpleSearch" -d "criteriaType0=ThirdPartyAnalysis&value0=yes&sortField=subject&sortDirection=descending&start=0&size=100" |
| Code Block | ||
|---|---|---|
| ||
downloadServerUrl=https://nbia.cancerimagingarchive.net/nbia-download/servlet/DownloadServlet
includeAnnotation=false
noOfrRetry=4
databasketId=manifest-1693254833353.tcia
manifestVersion=3.0
ListOfSeriesToDownload=
1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.1264
1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.1263
1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.1261
1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.1265
1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.1262 |
Manifest Text
Example Manifest Query
| Code Block |
|---|
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getManifestTextV2" -d "list=1.3.6.1.4.1.14519.5.2.1.6834.5010.100089621274100103247029607723&includeAnnotation=false" |
| Code Block | ||
|---|---|---|
| ||
"downloadServerUrl=https://nbia.cancerimagingarchive.net/nbia-download/servlet/DownloadServlet
includeAnnotation=false
noOfrRetry=4
databasketId=manifest-1692722233257.tcia
manifestVersion=3.0
ListOfSeriesToDownload=
1.3.6.1.4.1.14519.5.2.1.6834.5010.100089621274100103247029607723" |
Manifest for Text Search
This API takes a text value and generates a manifest file of series. This is an API version of the text search in the NBIA Radiology Portal GUI. See Performing a Text Search for more information.
Example getManifestForTextSearch Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -X POST "https://services.cancerimagingarchive.net/nbia-api/services/GetManifestForTextSearch" -d "textValue=CT" |
| Code Block | ||
|---|---|---|
| ||
downloadServerUrl=https://services.cancerimagingarchive.net/nbia-download/servlet/DownloadServlet
includeAnnotation=false
noOfrRetry=4
databasketId=manifest-1680987888150.tcia
manifestVersion=3.0
ListOfSeriesToDownload=
1.3.6.1.4.1.9328.50.4.563784
1.3.6.1.4.1.9328.50.4.568673
1.3.6.1.4.1.9328.50.4.568676
1.3.6.1.4.1.9328.50.4.568678
1.3.6.1.4.1.9328.50.4.569267
1.3.6.1.4.1.9328.50.4.569270 |
Manifest from Patient Study Series
This API takes a a parameter and generates a manifest file of patient IDs that match those parameters.
This API takes the following parameters:
- patientIDs (required)
- studyUIDs (optional)
- seriesUIDs (optional)
- anyOrAll (optional)
- includeAnnotation (optional)
Example getManifestFromPatientStudySeries Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN>" -k "https://services.cancerimagingarchive.net/nbia-api/services/getManifestFromPatientStudySeries" -d "patientIDs=ISPY1_1001" |
If successful, the API returns the following.
| Code Block | ||
|---|---|---|
| ||
downloadServerUrl=https://nbia.cancerimagingarchive.net/nbia-download/servlet/DownloadServlet
includeAnnotation=true
noOfrRetry=4
databasketId=manifest-1692722426170.tcia
manifestVersion=3.0
ListOfSeriesToDownload=
1.3.6.1.4.1.14519.5.2.1.7695.1700.250955243295773832626617549482
1.3.6.1.4.1.14519.5.2.1.7695.1700.360389360742427667526070655843
1.3.6.1.4.1.14519.5.2.1.7695.1700.334491271566855314830260417024
1.3.6.1.4.1.14519.5.2.1.7695.1700.658441262671287309457346305705
1.3.6.1.4.1.14519.5.2.1.7695.1700.131126392922209124942161386151 |
MD5 Hierarchy
Example getMD5Hierarchy Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getMD5Hierarchy" -d "Collection=ISPY1" |
| Code Block | ||
|---|---|---|
| ||
ce9ec0fd7cb437e5cd6b65cf358eea6a |
Manufacturer Values and Counts API
Example getManufacturerValuesAndCounts Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getManufacturerValuesAndCounts?Collection=4D-Lung" |
| Code Block | ||
|---|---|---|
| ||
[{"criteria":"ADAC","count":"20"},{"criteria":"Varian Imaging Laboratories, Switzerland","count":"20"}] |
MD5 Hash for Image
Generates an MD5 Hierarchy for a given Collection, PatientID, StudyInstanceUID, or SeriesInstanceUID, which can be compared to a previously generated hierarchy to determine if any changes have occurred to the data.
The API takes one argument:
- sopInstanceUid
Example MD5 Hash for Image Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/v2/getM5HashForImage?SOPInstanceUid=1.3.6.1.4.1.14519.5.2.1.6834.5010.129790817462380794533151446268" |
| Code Block | ||
|---|---|---|
| ||
f9a9afbc6a5295cead66f43a5965080d |
Modality Values and Counts
The Modality Values and Counts API returns the modality values plus the subject count for the modality. It optionally takes the following parameters.
- Collection
- BodyPartExamined
Example Modality Values and Counts Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getModalityValuesAndCounts?Collection=VICTRE" |
The API returns the modalities and their counts.
| Code Block | ||
|---|---|---|
| ||
[{"criteria":"MG","count":"2994"}] |
Restrictions for Simple Search
The Restrictions on Simple Search API returns whether any series returned by simple search has commercial restrictions.
The API takes the same parameters as the Simple Search GUI.
Example getRestrictionsForSimpleSearch Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getRestrictionsForSimpleSearch" -d "criteriaType0=ThirdPartyAnalysis&value0=yes&sortField=subject&sortDirection=descending&start=0&size=1000000" |
The API returns "Yes" if there are commercial restrictions and "No" if there are not.
Series Metadata 2
The Series Metadata API allows returns the metadata needed by the client for a set of series as CSV.
Example Series Metadata 2 Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k https://services.cancerimagingarchive.net/nbia-api/services/getSeriesMetadata2" -d "list=2.25.110315838408248624082166543013557943798" |
The API returns ok if successful, and the error if one occurs.
| Code Block | ||
|---|---|---|
| ||
"Subject ID","Study UID","Study Description","Study Date","Series ID","Series Description","Number of images","File Size (Bytes)","Collection Name","Modality","Manufacturer","3rd Party Analysis","Data Description URI","Series Number","License Name","License URL","Date Released","Series Date","Protocol Name","Body Part Examined","Annotations Flag","Manufacturer Model Name","Software Versions","TimeStamp"
"9189822998","2.25.144594706293612984382396531662084750838","CT HIP W/O CONTRAST,BILAT","1989-02-15","2.25.110315838408248624082166543013557943798","Surview Test","5","3414180","Col4","CT","Philips","NO","","5865","Creative Commons Attribution 3.0 Unported License","http://creativecommons.org/licenses/by/3.0/","","","Abd/Pelvis W/C/Abdomen/Sv","BLADDER","","Mx8000 IDT 16","3.2.0","2023-11-28 20:29:48.0" |
Species Tax
The Species Tax API returns the species taxonomy and takes no parameters.
Example Species Tax Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k https://services.cancerimagingarchive.net/nbia-api/services/getSpeciesTax |
The API returns the current species taxonomy.
| Code Block | ||
|---|---|---|
| ||
[{"speciesCode":"447612001","speciesDescription":"Mus musculus"},{"speciesCode":"448771007","speciesDescription":"Canis lupus familiaris"},{"speciesCode":"337915000","speciesDescription":"Homo sapiens"}] |
Species Values And Counts
The Get Species Values And Counts API returns the values and counts for species and takes the same parameters as the Simple Search GUI.
Example Species Values And Counts Query
| Code Block |
|---|
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getSpeciesValuesAndCounts" |
The API returns the values and counts for species.
| Code Block | ||
|---|---|---|
| ||
[{"criteria":"337915000","count":"33793"},{"criteria":"447612001","count":"393"},{"criteria":"448771007","count":"57"}] |
Study Drill Down With Series IDs
The Study Drill Down API provides the functionality in the portal where the user drills down to the studies and series associated with a given user.
The API takes a list of series to query, using the parameter "list," that is repeated for each series instance UIDs you want to retrieve.
Example Study Drill Down With Series IDs Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getStudyDrillDownWithSeriesIds" -d "list=1.3.6.1.4.1.14519.5.2.1.6834.5010.322628904903035357840500590726" |
The Study Drill Down With Series Ids API returns JSON with the information to populate the drill down to study screen. There can be multiple studies.
| Code Block | ||
|---|---|---|
| ||
[{"studyId":"1.3.6.1.4.1.14519.5.2.1.6834.5010.335014117706890137582032169351","date":874299600000,"description":"p4","id":221806615,"study_id":null,"excludeCommercial":null,"seriesList":[{"seriesNumber":"500","seriesUID":"1.3.6.1.4.1.14519.5.2.1.6834.5010.322628904903035357840500590726","numberImages":50,"modality":"CT","manufacturer":"Varian Imaging Laboratories, Switzerland","annotationsFlag":false,"annotationsSize":0,"patientId":"100_HM10395","patientPkId":"221773824","studyId":"1.3.6.1.4.1.14519.5.2.1.6834.5010.335014117706890137582032169351","studyPkId":221806615,"totalSizeForAllImagesInSeries":26405888,"project":"4D-Lung","description":"P4^P100^S100^I0, Gated, 0.0%","dataProvenanceSiteName":null,"manufacturerModelName":null,"softwareVersion":null,"maxFrameCount":"0","studyDate":null,"studyDesc":null,"bodyPartExamined":"LUNG","study_id":null,"thirdPartyAnalysis":null,"descriptionURI":"https://doi.org/10.7937/K9/TCIA.2016.ELN8YGLE","sopClassUID":null,"licenseName":null,"licenseUrl":null,"commercialRestrictions":false,"seriesId":"1.3.6.1.4.1.14519.5.2.1.6834.5010.322628904903035357840500590726","studyDateString":"","seriesPkId":221872172,"exactSize":26405888}]}] |
Thumbnail
The Get Thumbnail API returns the DICOM tags and values associated with the image.
- seriesUID
- objectUID
Example Thumbnail Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getThumbnail" -d "seriesUID=1.3.6.1.4.1.14519.5.2.1.3023.4024.536949365601910993926257264114&objectUID=1.3.6.1.4.1.14519.5.2.1.3023.4024.822829852603295162591249163632" --output Thumbnail.jpg |
The API returns a JPG thumbnail.
| Code Block | ||
|---|---|---|
| ||
" % Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 13757 0 13608 100 149 13608 149 0:00:01 --:--:-- 0:00:01 14435" |
Text Search
The text search API is used to run queries for Text Search in the portal. The text search takes an argument, textValue.
Example Text Search Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -X POST "https://services.cancerimagingarchive.net/nbia-api/services/getTextSearch" -d "textValue=mouse" |
Note that the returned JSON now includes the "hit" that was found by the Solr search engine.
| Code Block | ||
|---|---|---|
| ||
[{"subjectId":"292921-168-R-1404","project":"PDMR-292921-168-R","id":716669003,"totalNumberOfStudies":4,"totalNumberOfSeries":7,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[716734938,716734939],"seriesAndModality":[],"studyIdentifier":716701807},{"seriesIdentifiers":[716734940,716734941],"seriesAndModality":[],"studyIdentifier":716701808},{"seriesIdentifiers":[716734942,716734943],"seriesAndModality":[],"studyIdentifier":716701809},{"seriesIdentifiers":[716734944],"seriesAndModality":[],"studyIdentifier":716701810}]},{"subjectId":"292921-168-R-1405","project":"PDMR-292921-168-R","id":679608323,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[679706630,679706631],"seriesAndModality":[],"studyIdentifier":679641091},{"seriesIdentifiers":[716734890,716734891],"seriesAndModality":[],"studyIdentifier":716701780},{"seriesIdentifiers":[716734892],"seriesAndModality":[],"studyIdentifier":716701781},{"seriesIdentifiers":[716734893,716734894],"seriesAndModality":[],"studyIdentifier":716701782},{"seriesIdentifiers":[716734895,716734896],"seriesAndModality":[],"studyIdentifier":716701783}]},{"subjectId":"292921-168-R-1406","project":"PDMR-292921-168-R","id":716668994,"totalNumberOfStudies":4,"totalNumberOfSeries":7,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[716734867],"seriesAndModality":[],"studyIdentifier":716701766},{"seriesIdentifiers":[716734868,716734869],"seriesAndModality":[],"studyIdentifier":716701767},{"seriesIdentifiers":[716734870,716734871],"seriesAndModality":[],"studyIdentifier":716701768},{"seriesIdentifiers":[716734872,716734873],"seriesAndModality":[],"studyIdentifier":716701769}]},{"subjectId":"292921-168-R-1407","project":"PDMR-292921-168-R","id":679608326,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[679706636,679706637],"seriesAndModality":[],"studyIdentifier":679641094},{"seriesIdentifiers":[716734966,716734967],"seriesAndModality":[],"studyIdentifier":716701823},{"seriesIdentifiers":[716734968,716734969],"seriesAndModality":[],"studyIdentifier":716701824},{"seriesIdentifiers":[716734970,716734971],"seriesAndModality":[],"studyIdentifier":716701825},{"seriesIdentifiers":[716734972],"seriesAndModality":[],"studyIdentifier":716701826}]},{"subjectId":"292921-168-R-1408","project":"PDMR-292921-168-R","id":679608325,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> 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Overview","studyIdentifiers":[{"seriesIdentifiers":[942442610,942442798],"seriesAndModality":[],"studyIdentifier":942375319},{"seriesIdentifiers":[942442612,942442770],"seriesAndModality":[],"studyIdentifier":942375321},{"seriesIdentifiers":[94244262 |
Updated Series
This API returns the series that have been updated since a given date.
The API takes one argument:
- fromDate - the date to get the updates have happened
Example Get Updated Series Query
| Code Block | ||
|---|---|---|
| ||
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/v2/getUpdatedSeries?fromDate=08/08/2023" |
The API returns the updated series.
| Code Block | ||
|---|---|---|
| ||
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2014A","ImageCount":152},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.93285.502.4.613786 1.249747234475942834682299784244177066122","StudyInstanceUID":"1.3.6.1.4.1.932814519.505.42.613791 1.3.6.1.4.1.9328.50.4.613794 1.192180924543597682091545532955797799290","Modality":"CT","SeriesDate":"2016-10-25 00:00:00.0","SeriesDescription":"<MPR Range[1]>","BodyPartExamined":"ABDOMEN","SeriesNumber":603,"Collection":"CPTAC-UCEC","PatientID":"C3L-05848","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":141},{"SeriesInstanceUID":"1.3.6.1.4.1.932814519.5.502.4.614396 1.163657679348320741926204299059702564472","StudyInstanceUID":"1.3.6.1.4.1.932814519.5.502.4.614399 |
Manifest from Patient Study Series
This API takes a a parameter and generates a manifest file of patient IDs that match those parameters.
This API takes the following parameters:
- patientIDs (required)
- studyUIDs (optional)
- seriesUIDs (optional)
- anyOrAll (optional)
- includeAnnotation (optional)
Example getManifestFromPatientStudySeries Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getManifestFromPatientStudySeries" -d "patientIDs=ISPY1_1001" |
If successful, the API returns the following.
| Code Block | ||
|---|---|---|
| ||
downloadServerUrl=https://nbia.cancerimagingarchive.net/nbia-download/servlet/DownloadServlet includeAnnotation=true noOfrRetry=4 databasketId=manifest-1691620358806.tcia manifestVersion=3.0 ListOfSeriesToDownload= 1.67953080284076345917473005680077306867","Modality":"CT","SeriesDate":"2016-09-26 00:00:00.0","SeriesDescription":"Chest\/Abd\/Pel LUNG 3.0 B60f","BodyPartExamined":"CHEST","SeriesNumber":3,"Collection":"CPTAC-UCEC","PatientID":"C3L-03467","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":142},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.250955243295773832626617549482 89337107620575759211601953173555846864","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.360389360742427667526070655843 192180924543597682091545532955797799290","Modality":"CT","SeriesDate":"2016-10-25 00:00:00.0","SeriesDescription":"<MPR Range>","BodyPartExamined":"ABDOMEN","SeriesNumber":602,"Collection":"CPTAC-UCEC","PatientID":"C3L-05848","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":114},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.334491271566855314830260417024 204734451354467159013076861301815243913","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.658441262671287309457346305705 1.3.6.1.4.1.14519.5.2.1.7695.1700.131126392922209124942161386151 58230391169750649153488661664117068107","Modality":"CT","SeriesDate":"2016-03-21 00:00:00.0","SeriesDescription":"SAGITTAL","BodyPartExamined":"CHEST","SeriesNumber":5,"Collection":"CPTAC-UCEC","PatientID":"C3L-03467","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":129},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.933316195746120155903339740103 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00:00:00.0","SeriesDescription":"CAP 3.0 B60f","BodyPartExamined":"ABDOMEN","SeriesNumber":3,"Collection":"CPTAC-UCEC","PatientID":"C3L-03467","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":143},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.177623757250131970264857092191 62142467323605237784770516904000895215","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.154110825244369885171851551255 104353760415096244893510486715328792697","Modality":"CT","SeriesDate":"2018-03-19 00:00:00.0","SeriesDescription":"CAP 3.0 B20f","BodyPartExamined":"ABDOMEN","SeriesNumber":2,"Collection":"CPTAC-UCEC","PatientID":"C3L-03467","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":314},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.284567351304426376226790714264 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64","SoftwareVersions":"syngo CT 2014A","ImageCount":201},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.304222333797754930798522430195 37671622521464066812631978471928306007","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.571620122698689331448512191875 1.3.6.1.4.1.14519.5.2.1.7695.1700.276008182492477899149189119200 58230391169750649153488661664117068107","Modality":"CT","SeriesDate":"2016-03-21 00:00:00.0","SeriesDescription":"CORONAL","BodyPartExamined":"CHEST","SeriesNumber":4,"Collection":"CPTAC-UCEC","PatientID":"C3L-03467","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":84},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.135612062012804030483357359425 253168115551446290926256440815409084370","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.311831286327220528148178588078 1.3.6.1.4.1.14519.5.2.1.7695.1700.509490993107578827767081500491 1.67953080284076345917473005680077306867","Modality":"CT","SeriesDate":"2016-09-26 00:00:00.0","SeriesDescription":"CORONAL","BodyPartExamined":"CHEST","SeriesNumber":4,"Collection":"CPTAC-UCEC","PatientID":"C3L-03467","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":114},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.288985999148727959387883654619 224409518854330380839516384479543090458","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.180006052978659726439424740707 77155367638621502173880012762024128638","Modality":"CT","SeriesDate":"2015-03-03 00:00:00.0","SeriesDescription":"CORONAL","BodyPartExamined":"CHEST","SeriesNumber":4,"Collection":"CPTAC-UCEC","PatientID":"C3L-02747","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":85},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.270834182764177195175091536181 269703894431372598509100851602159288765","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.177962682118221509857252041052 1.3.6.1.4.1.14519.5.2.1.7695.1700.332791230985209928247615451914 143508475032044659595485724455199959932","Modality":"CT","SeriesDate":"2016-07-24 00:00:00.0","SeriesDescription":"CORONAL","BodyPartExamined":"ABDOMEN","SeriesNumber":4,"Collection":"CPTAC-UCEC","PatientID":"C3L-05848","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":71},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.121164861481441093151316977794 97934223577100833484431647137145455556","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.520396403274327587353342330294 .2.1.67953080284076345917473005680077306867","Modality":"CT","SeriesDate":"2016-09-26 00:00:00.0","SeriesDescription":"Chest\/Abd\/Pel soft tissue 3.0 B20f","BodyPartExamined":"CHEST","SeriesNumber":2,"Collection":"CPTAC-UCEC","PatientID":"C3L-03467","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":312},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.195950422361997478270837056988 140707133919097170612230090340002977287","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.7695.1700.503697125043256633091008976690 1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.286 1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.288 1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.287 104353760415096244893510486715328792697","Modality":"CT","SeriesDate":"2018-03-19 00:00:00.0","SeriesDescription":"CAP 3.0 SPO cor","BodyPartExamined":"ABDOMEN","SeriesNumber":4,"Collection":"CPTAC-UCEC","PatientID":"C3L-03467","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":101},{"SeriesInstanceUID":"1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.285 |
MD5 Hierarchy
This API takes the following parameters:
- SeriesInstanceUID (optional)
- StudyInstanceUID (optional)
- PatientID (optional)
- Collection (optional)
Example getMD5Hierarchy Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getMD5Hierarchy" -d "Collection=LIDC" |
| Code Block | ||
|---|---|---|
| ||
3ef5cbc40b247c4a6f72a4f90f504ad1 |
Manufacturer Values and Counts API
The Manufacturer Values and Counts API returns the modality values plus the manufacturer count for the modality. It optionally takes the following parameters.
- Collection
- Modality
- Body Part Examined
Example getManufacturerValuesAndCounts Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getManufacturerValuesAndCounts?Modality=PT" |
The API returns the manufacturer and their counts.
| Code Block | ||
|---|---|---|
| ||
[
{"criteria":"DeJarnette Research Systems","count":"2"},
{"criteria":"FUJI PHOTO FILM Co., ltd.","count":"4"}
] |
MD5 Hash for Image API
Generates an MD5 Hierarchy for a given Collection, PatientID, StudyInstanceUID, or SeriesInstanceUID, which can be compared to a previously generated hierarchy to determine if any changes have occurred to the data.
The API takes one argument:
- sopInstanceUid
Example MD5 Hash for Image Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/v2/getM5HashForImage?SOPInstanceUid=14519.5.2.1.43546293045303953649134661873116783074","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.192180924543597682091545532955797799290","Modality":"CT","SeriesDate":"2016-10-25 00:00:00.0","SeriesDescription":"Topogram 0.6 T20s","BodyPartExamined":"ABDOMEN","SeriesNumber":2,"Collection":"CPTAC-UCEC","PatientID":"C3L-05848","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":2},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.237642993417197417654052076474980244050","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.104353760415096244893510486715328792697","Modality":"CT","SeriesDate":"2018-03-19 00:00:00.0","SeriesDescription":"Topogram 0.6 T20s","BodyPartExamined":"ABDOMEN","SeriesNumber":1,"Collection":"CPTAC-UCEC","PatientID":"C3L-03467","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":1},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.261450458963518213442565909435054795413","StudyInstanceUID":"1.3.6.1.69194.1.4624.302693755253199226108824913410" |
The API returns the MD5 hash.
Modality Values and Counts API
The Modality Values and Counts API returns the modality values plus the subject count for the modality. It optionally takes the following parameters.
- Collection
- BodyPartExamined
Example Modality Values and Counts Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getModalityValuesAndCounts?Collection=LIDC" |
The API returns the modalities and their counts.
| Code Block | ||
|---|---|---|
| ||
[
{"criteria":"CT","count":"397"}
] |
Restrictions for Simple Search API
The Restrictions on Simple Search API returns whether any series returned by simple search has commercial restrictions.
The API takes the same parameters as the Simple Search GUI.
Example getRestrictionsForSimpleSearch Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k "https://localhost:8080/nbia-api/services/getRestrictionsForSimpleSearch" -d "criteriaType0=ThirdPartyAnalysis&value0=yes&sortField=subject&sortDirection=descending&start=0&size=1000000" |
The API returns "Yes" if there are commercial restrictions and "No" if there are not.
Series Metadata API
The Series Metadata API allows returns the metadata needed by the client for a set of series as CSV.
The API takes one argument:
- list- Comma-separated list of series to return
Example Series Metadata Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getSeriesMetadata2" -d "list=9999.293545899757968087866143572947417050996,9999.172212451609088872857235914630319746611" |
The API returns ok if successful, and the error if one occurs.
| Code Block | ||
|---|---|---|
| ||
Subject ID,Study UID,Study Description,Study Date,Series ID,Series Description,Number of images,File Size (Bytes),Collection Name,Modality,Manufacturer,3rd Party Analysis,Data Description URI,Series Number,License Name,License URL STS_010,14519.5.2.1.67953080284076345917473005680077306867","Modality":"CT","SeriesDate":"2016-09-26 00:00:00.0","SeriesDescription":"Topogram 0.6 T20s","BodyPartExamined":"CHEST","SeriesNumber":1,"Collection":"CPTAC-UCEC","PatientID":"C3L-03467","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":1},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.50446370192855283669200346817959448281","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.143508475032044659595485724455199959932","Modality":"CT","SeriesDate":"2016-07-24 00:00:00.0","SeriesDescription":"Topogram 0.6 T20s","BodyPartExamined":"ABDOMEN","SeriesNumber":1,"Collection":"CPTAC-UCEC","PatientID":"C3L-05848","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":2},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.5168.1900.154535988064062152660648619556,MRI LT LEG +C,2003-12-12,257013319324343199851187045765222186475","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.5168.1900.104193299251798317056218297018,2. AXIAL T1 BOTH LEGS - RESEARCH,48,25273786,Soft-tissue-Sarcoma,MR,GE MEDICAL SYSTEMS,,https://doi.org/10.7937/K9/TCIA.2015.7GO2GSKS,2,Creative Commons Attribution 3.0 Unported License,https://creativecommons.org/licenses/by/3.0/ |
Species Tax API
The Species Tax API returns the species taxonomy and takes no parameters.
Example Species Tax Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k https://services.cancerimagingarchive.net/nbia-api/services/getSpeciesTax |
The API returns the current species taxonomy.
| Code Block | ||
|---|---|---|
| ||
[{"speciesCode":"447612001","speciesDescription":"Mus musculus"},{"speciesCode":"448771007","speciesDescription":"Canis lupus familiaris"},{"speciesCode":"337915000","speciesDescription":"Homo sapiens"}] |
Species Values And Counts API
The Get Species Values And Counts API returns the values and counts for species and takes the same parameters as the Simple Search GUI.
Example Species Values And Counts Query
| Code Block |
|---|
curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getSpeciesValuesAndCounts" |
The API returns the values and counts for species.
| Code Block | ||
|---|---|---|
| ||
[{"criteria":"337915000","count":"33650"},{"criteria":"447612001","count":"393"},{"criteria":"448771007","count":"57"}] |
Study Drill Down With Series IDs API
The Study Drill Down API provides the functionality in the portal where the user drills down to the studies and series associated with a given user.
The API takes a list of series to query, using the parameter "list," that is repeated for each series instance UIDs you want to retrieve.
Example Study Drill Down With Series IDs Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getStudyDrillDownWithSeriesIds" -d "list=88.8.327219764444138790630242591550292040652&list=88.8.48940758713094405889891485363115655700" |
The Study Drill Down With Series Ids API returns JSON with the information to populate the drill down to study screen. There can be multiple studies.
| Code Block | ||
|---|---|---|
| ||
[ {"studyId" : "88.8.40100432719994870453539459050137164864",
"date" : 671515200000,
"description" : "CT CHEST W/O CONTRAST",
"id" : 1310720,
"seriesList" : [ {
"seriesNumber" : "3",
"seriesUID" : "88.8.326983478845196402838719404831299211067",
"numberImages" : 9,
"modality" : "CT",
"manufacturer" : null,
"annotationsFlag" : false,
"annotationsSize" : 0,
"patientId" : "Project-3076386612",
"patientPkId" : "1277952",
"studyId" : "88.8.40100432719994870453539459050137164864",
"studyPkId" : 1310720,
"totalSizeForAllImagesInSeries" : 4739336,
"project" : "Project",
"description" : "LUNG",
"dataProvenanceSiteName" : null,
"manufacturerModelName" : null,
"softwareVersion" : null,
"maxFrameCount" : "0",
"seriesId" : "88.8.326983478845196402838719404831299211067",
"seriesPkId" : 1376256,
"exactSize" : 4739336 } ]} ] |
Thumbnail API
The Get Thumbnail API returns the DICOM tags and values associated with the image.
- seriesUID
- objectUID
Example Thumbnail Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getThumbnail" -d "seriesUID=.1.77155367638621502173880012762024128638","Modality":"CT","SeriesDate":"2015-03-03 00:00:00.0","SeriesDescription":"Topogram 0.6 T20s","BodyPartExamined":"CHEST","SeriesNumber":1,"Collection":"CPTAC-UCEC","PatientID":"C3L-02747","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":1},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.155009580845247983590647218721888717749","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.58230391169750649153488661664117068107","Modality":"CT","SeriesDate":"2016-03-21 00:00:00.0","SeriesDescription":"Topogram 0.6 T20s","BodyPartExamined":"CHEST","SeriesNumber":1,"Collection":"CPTAC-UCEC","PatientID":"C3L-03467","Manufacturer":"SIEMENS","ManufacturerModelName":"Sensation 64","SoftwareVersions":"syngo CT 2014A","ImageCount":1},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.205668089768657343528117029713103142029","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.177774985137352576417359587837444674436","Modality":"MR","ProtocolName":"t1_vibe_tra_recon coronal too","SeriesDate":"1994-04-18 00:00:00.0","SeriesDescription":"_T1_t1_vibe_tra_recon coronal too","BodyPartExamined":"HEAD","SeriesNumber":7,"Collection":"Vestibular-Schwannoma-MC-RC","PatientID":"VS-SEG-032","Manufacturer":"SIEMENS","ManufacturerModelName":"SymphonyTim","SoftwareVersions":"syngo MR B17","ImageCount":24},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.171418726181894059770838067663080088554","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.208289673453114055830732280203640249870","Modality":"MR","ProtocolName":"COR_T2","SeriesDate":"2011-11-27 00:00:00.0","SeriesDescription":"COR_T2","BodyPartExamined":"ABDOMEN","SeriesNumber":3,"Collection":"CPTAC-CCRCC","PatientID":"C3L-01463","Manufacturer":"SIEMENS","ManufacturerModelName":"Aera","SoftwareVersions":"syngo MR E11","ImageCount":30},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.5.2.1.3023.4024.536949365601910993926257264114&objectUID=103502325371497058487486382016244519383","StudyInstanceUID":"1.3.6.1.4.1.14519.5.2.1.3023.4024.822829852603295162591249163632" --output Thumbnail.jpg |
The API returns a JPG thumbnail.
Text Search API
The text search API is used to run queries for Text Search in the portal. The text search takes an argument, textValue.
Example Text Search Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getTextSearch" -d "textValue=lung" |
Note that the returned JSON now includes the "hit" that was found by the Solr search engine.
| Code Block | ||
|---|---|---|
| ||
[{
"subjectId":"Project-3076386612",
"project":"Project",
"id":1277952,
"totalNumberOfStudies":1,
"totalNumberOfSeries":1,
"hit":"<em>seriesDesc</em>: <strong>LUNG</strong>",
"studyIdentifiers":[{
"seriesIdentifiers":[1376256],
"studyIdentifier":1310720
}]
}] |
Updated Series API
This API returns the series that have been updated since a given date.
The API takes one argument:
- fromDate - the date to get the updates have happened
Example Get Updated Series Query
| Code Block | ||
|---|---|---|
| ||
curl -H "YOUR_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/v2/getUpdatedSeries?fromDate=01/01/2020" |
The API returns the updated series.
| Code Block | ||
|---|---|---|
| ||
[ { 208289673453114055830732280203640249870","Modality":"MR","ProtocolName":"AX_T1_FS_+C_20_SEC","SeriesDate":"2011-11-27 00:00:00.0","SeriesDescription":"AX_T1_FS_+C_20_SEC","BodyPartExamined":"ABDOMEN","SeriesNumber":13,"Collection":"CPTAC-CCRCC","PatientID":"C3L-01463","Manufacturer":"SIEMENS","ManufacturerModelName":"Aera","SoftwareVersions":"syngo MR E11","ImageCount":80},{"SeriesInstanceUID":"1.3.6.1.4.1.14519.59625.12.1.0.0.1560173490.85106.1108338939505521682156134341331869087312", "StudyInstanceUID":"1.3.6.1.4.1.596214519.5.12.1.0.1560173490.85106.1", "Modality":"SR", 208289673453114055830732280203640249870","Modality":"MR","ProtocolName":"AX_T1_FS+C_90_SEC","SeriesDate":"20162011-0111-0627 00:00:00.0", "SeriesDescription":"PDM Mouse Overview", AX_T1_FS+C_90_SEC","BodyPartExamined":"ABDOMEN","SeriesNumber":1, 14,"Collection":"ProjectCPTAC-CCRCC", "PatientID":"128783-104-T_VQ4", C3L-01463","Manufacturer":"PixelMedSIEMENS", "ManufacturerModelName":"XSLTAera", "SoftwareVersions":"0.1syngo MR E11", "ImageCount":1 }80},{"SeriesInstanceUID":"1.3.6 |