Purpose of this Guide
This guide explains the advanced features of the National Biomedical Imaging Archive (NBIA) REST APIs that are geared towards developers seeking to integrate searching and downloading TCIA data into their own web and desktop applications.
For information about creating basic queries and downloading data for image analysis, refer to the NBIA Search REST API Guide and NBIA Search with Authentication REST API Guide.
NBIA Advanced REST API Base URL, Format, and Return Values
The API structure consists of a base URL followed by the API and query parameters, in that order. For example, the AP
I shown below requests all Body Part Values and Counts for the PT modality.
Note: To accommodate special characters in passwords, use double quotes on Windows and single quotes on Mac and Linux.
We can break this down as follows.
Object | Example |
---|---|
Access Token | cd2b2895-85d0-49c5-bd75-804f162da942 |
BaseURL | |
Resource | /nbia-api/services |
Endpoint | getBodyPartValuesAndCounts |
Query Parameters | Modality=PT |
If the value for an attribute is not populated in the specified collection, it will not appear in the returned values.
All APIs return results in JSON format except for the Thumbnail API (JPG), Manifest Text API (TXT), and Series Metadata 2 API (CSV).
Secure Access to NBIA REST Services
Access to any NBIA Advanced REST API requires a token that you must request. This token can then be used on subsequent requests to authorize access to resources. This token will expire in two hours but you can refresh it.
The NBIA REST API supports secure access to private data in the Client Credentials authorization flow with Spring Security and OAuth2. The Client Credentials authorization flow is also known as "signed fetch" or 2-legged OAuth. The following figure illustrates the typical use case for REST API calls made on the web using 2-legged OAuth. For more information regarding the specific workflow, consult the OAuth2 Specification.
+---------+ +---------------+ | | | | | |>--(A)- Client Authentication --->| Authorization | | Client | | Server | | |<--(B)---- Access Token ---------<| | | | | | +---------+ +---------------+
Figure 1: Client Credentials Flow
Requesting a Token
Access to any NBIA Advanced REST API requires an access token. A request for an access token takes the following structure. Note that USER should be your TCIA username and PASSWORD should be your TCIA password.
Note: To accommodate special characters in passwords, use double quotes on Windows and single quotes on Mac and Linux.
curl -v -d "username=USER&password=PASSWORD&client_id=NBIA&grant_type=password" -k https://services.cancerimagingarchive.net/nbia-api/oauth/token
If you don't have a TCIA account, you can access public data using the "nbia_guest" account with no password, as follows.
curl -v -d "username=nbia_guest&password=&client_id=NBIA&grant_type=password" -k https://services.cancerimagingarchive.net/nbia-api/oauth/token
How a Token is Returned/Granted/Given
A successful token request returns a standard access token in JSON format. The value after "access_token" will be longer than this example.
{"access_token":"cd2b2895-85d0-49c5-bd75-804f162da942","expires_in":7200,"refresh_expires_in":7200,"refresh_token":"eyJhbGciOiJIUzI1NiIsInR5cCIgO","not-before-policy":0,"session_state":"92a199c6-84ed-48aa-a0d2-059bbb99bc90","scope":"openid profile email"}
Make a note of the access token you received and pass it with the REST service call.
# Request for modality values and counts curl -H "Authorization:Bearer cd2b2895-85d0-49c5-bd75-804f162da942" -k "https://services.cancerimagingarchive.net/nbia-api/services/getModalityValuesAndCounts?Collection=LIDC-IDRI"
A successful service request returns the value in a defined format.
Refreshing the Token
You can refresh your access token for an additional two hours by passing the refresh token from your original token request.
# Request for refreshing the token curl -X -v -d "client_id=nbia&grant_type=refresh_token&refresh_token=YOUR_REFRESH_TOKEN" -X POST -k https://nbia.cancerimagingarchive.net/nbia-api/oauth/token
In the following result, 7200
is the seconds before the token expires.
{"access_token":"YOUR_ACCESS_TOKEN","expires_in":7200,"refresh_expires_in":7200,"refresh_token":"YOUR_REFRESH_TOKEN","token_type":"Bearer","id_token":"YOUR_ID_TOKEN","not-before-policy":0,"session_state":"531425b6-425d-44f8-bc74-41200d6803c0","scope":"openid profile email"}
Logging Out
The following is an example request to log out. Logging out invalidates the token you previously requested.
# Request for logout curl -X -v -d "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/logout"
The request does not return any values.
Accessing the National Lung Screening Trial (NLST) collection
Due to its size, the National Lung Screening Trial (NLST) collection lives on a separate NBIA server. Since this server only holds the public NLST collection, there is no reason to create an API token with your own credentials. To access these data via the Advanced REST API, you must change the URL to obtain the authentication token from https://nlst.cancerimagingarchive.net/nbia-api/oauth/token. You can then use https://nlst.cancerimagingarchive.net/nbia-api/services/ to make REST API calls. In both cases, the beginning of the URL is changed from "services" to "nlst." Examples of requesting a token and performing an API query are shown below:
curl -X -v -d "username=nbia_guest&password=&client_id=NBIA&grant_type=password" -X POST -k https://nlst.cancerimagingarchive.net/nbia-api/oauth/token
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://nlst.cancerimagingarchive.net/nbia-api/services/getBodyPartValuesAndCounts?Modality=PT"
Advanced REST APIs
The TCIA Radiology Portal’s search features use the following Advanced REST APIs.
Query Name | Return Values | Query Parameters |
---|---|---|
Body Part Values and Counts | Modality values and body part count for the modality API example and return values for getBodyPartValuesAndCounts |
|
Collection Descriptions | The collection's description | collectionName (O) |
Collection or Series for DOI | The collection and/or series with the Digital Object Identifier (DOI) API example and return values for getCollectionorSeriesforDOI |
|
Collection Values and Counts | The collections and the subject count for the collection API example and return values for getCollectionValuesandCounts | |
Create Saved Cart | Creates a saved cart (list) API example and return values for Create Saved Cart (createSharedList) |
|
DICOM Metadata by Series UID | Provides the functionality in the portal where the DICOM data is retrieved from a series | SeriesUID |
Extended Simple Search with Modality and Body Part Paged | API example and return values for getSimpleSearchWithModalityAndBodyPartPaged |
|
Image with MD5 Hash | Zip file with the images and a CSV file containing the MD5 hashes | SeriesInstanceUID |
Manifest for Simple Search | The Manifest Text for Simple Search API allows the creation of a manifest file that can be used to execute the NBIA Data Retriever. API example and return values for getManifestForSimpleSearch | The API takes the same arguments as the Simple Search GUI. |
Manifest Text | The Manifest Text API allows the creation of a manifest file that can be used to execute the NBIA Data Retriever. |
|
Manifest for Text Search | Generates a manifest file of series. This is an API version of the text search in the NBIA Radiology Portal GUI. See Performing a Text Search for more information. | textValue |
Manifest from Patient Study Series | A manifest file of patient IDs that match the input parameters API example and return values for getManifestfromPatientStudySeries |
|
MD5 Hierarchy | API example and return values for getMD5Hierarchy |
|
Manufacturer Values and Counts | The manufacturer and their counts API example and return values for getManufacturerValuesandCounts | Collection (R) |
MD5 Hash for Image | The API returns a zip file containing the DICOM images and a CSV file with the MD5 hash code for each image file. | sopInstanceUid |
Modality Values and Counts | The modality values plus the manufacturer count for the modality API example and return values for getModalityValuesandCounts |
|
Restrictions for Simple Search | API example and return values for getRestrictionsforSimpleSearch | |
Series Metadata 2 | The Series Metadata API allows returns the metadata needed by the client for a set of series as CSV. | list- Comma-separated list of series to return (R) |
Species Tax | API example and return values for getSpeciesTax | N/A |
Species Values And Counts | API example and return values for getSpeciesValuesAndCounts | |
Study Drill Down With Series IDs | API example and return values for getStudyDrillDownWithSeriesIDs | list |
Thumbnail | API example and return values for getThumbnail | seriesUID objectUID |
Text Search | API example and return values for getTextSearch | textValue |
Return Values
If the value for an attribute is null in the specified collection, it will not appear in the returned values.
- Body Part Values and Counts
- Collection Descriptions
- Collection or Series for DOI
- Collection Values and Counts
- Create Saved Cart
- DICOM Metadata by Series UID
- Extended Simple Search with Modality and Body Part Paged
- Image with MD5 Hash
- Manifest for Simple Search
- Manifest Text
- Manifest for Text Search
- Manifest from Patient Study Series
- MD5 Hierarchy
- Manufacturer Values and Counts API
- MD5 Hash for Image
- Modality Values and Counts
- Restrictions for Simple Search
- Series Metadata 2
- Species Tax
- Species Values And Counts
- Study Drill Down With Series IDs
- Thumbnail
- Text Search
Body Part Values and Counts
Example Body Part Values and Counts Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getBodyPartValuesAndCounts?Modality=PT"
[ {"criteria":"ABDOMEN","count":"13"}, {"criteria":"CHEST","count":"298"}, {"criteria":"Chest","count":"1"}, {"criteria":"HEADNECK","count":"1"},{ "criteria":"Lung","count":"76"}, {"criteria":"THORAX_1_ROUTINE","count":"1"} ]
Collection Descriptions
Example getCollectionDescriptions Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getCollectionDescriptions?collectionName=4D-Lung"
[{"description":"<p>\n\t<span>This data collection consists of images acquired during chemoradiotherapy of 20 locally-advanced, non-small cell lung cancer patients. The images include four-dimensional (4D) fan beam (4D-FBCT) and 4D cone beam CT (4D-CBCT). All patients underwent concurrent radiochemotherapy to a total dose of 64.8-70 Gy using daily 1.8 or 2 Gy fractions.</span></p>\n<p>\n\tA single Radiation Oncologist delineated targets and organs at risk in all 4D-FBCT and a limited number of 4D-CBCT images. All patients underwent concurrent radiochemotherapy to a total dose of 64.8-70 Gy using daily 1.8 or 2 Gy fractions.</p>\n<p>\n\tPlease see the <a href=\"http://doi.org/10.7937/K9/TCIA.2016.ELN8YGLE\" target=\"_blank\">4D-Lung</a> page to learn more about the images and to obtain any supporting metadata for this collection.</p>\n","id":236322816,"collectionDescTimestamp":1678942800000,"collectionName":"4D-Lung","userName":"tracyn","licenseId":null,"descriptionURI":"https://doi.org/10.7937/K9/TCIA.2016.ELN8YGLE"}]
Collection or Series for DOI
Example getCollectionOrSeriesForDOI Query for Collection
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getCollectionOrSeriesForDOI" -d "DOI=https://doi.org/10.7937/K9/TCIA.2016.ELN8YGLE&CollectionOrSeries=collection"
Return Value for Collection
[{""collection"":""4D-Lung"",""seriesInstanceUID"":null,""thirdPartyAnanlysis"":null}]
Example getCollectionOrSeriesForDOI Query for Series
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getCollectionOrSeriesForDOI" -d "DOI=https://doi.org/10.7937/K9/TCIA.2016.ELN8YGLE&CollectionOrSeries=series"
Return Value for Series
[{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100037757822547877540622085093"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100049789635984645130991826991"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100055011459662871005613719886"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100089621274100103247029607723"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100137773791956790807544371448"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100317870572035759487319851556"",""thirdPartyAnanlysis"":null},{""collection"":""4D-Lung"",""seriesInstanceUID"":""1.3.6.1.4.1.14519.5.2.1.6834.5010.100356687286872672203671297553"",""thirdPartyAnanlysis"":null},......."
Collection Values and Counts
Example Collection Values And Counts Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getCollectionValuesAndCounts"
[ {"criteria":"IDRI","count":"614"}, {"criteria":"IDRICONDUIT","count":"66"}, {"criteria":"LIDC","count":"397"}, {"criteria":"RIDER Pilot","count":"130"}, {"criteria":"SportInjury","count":"1"} ]
Create Saved Cart
Example Create Saved Cart Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/createSharedList" -d "list=1.3.6.1.4.1.14519.5.2.1.6834.5010.100089621274100103247029607723&list=1.3.6.1.4.1.14519.5.2.1.6919.4624.113493579075669637574394466994&name=MyNewShareList&description=mysharelistdescription&url=https://myurl.com"
NOTE: The "list" parameter must be repeated for each UID.
DICOM Metadata by Series UID
The SeriesUID is available from the Drill Down API call.
Example Metadata Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getDicomTags?SeriesUID=1.3.6.1.4.1.14519.5.2.1.6834.5010.100089621274100103247029607723"
The API sends back triples of all DICOM element, name, data in the file.
{"element":"(0027,1047)","name":"","data":"1.0"},{"element":"(0027,1050)","name":"","data":"0.0"},{"element":"(0027,1051)","name":"","data":"0.0"},{"element":"(0028,0002)","name":"Samples per Pixel","data":"1"},{"element":"(0028,0004)","name":"Photometric Interpretation","data":"MONOCHROME2"},{"element":"(0028,0010)","name":"Rows","data":"512"},{"element":"(0028,0011)","name":"Columns","data":"512"},{"element":"(0028,0030)","name":"Pixel Spacing","data":"0.878906\\0.878906"},{"element":"(0028,0100)","name":"Bits Allocated","data":"16"},{"element":"(0028,0101)","name":"Bits Stored","data":"16"},{"element":"(0028,0102)","name":"High Bit","data":"15"},{"element":"(0028,0103)","name":"Pixel Representation","data":"1"},{"element":"(0028,0120)","name":"Pixel Padding Value","data":"-2000"},{"element":"(0028,0303)","name":"Longitudinal Temporal Information Modified","data":"MODIFIED"},{"element":"(0028,1050)","name":"Window Center","data":"40"},{"element":"(0028,1051)","name":"Window Width","data":"400"},{"element":"(0028,1052)","name":"Rescale Intercept","data":"0"},{"element":"(0028,1053)","name":"Rescale Slope","data":"1"},{"element":"(0028,1054)","name":"Rescale Type","data":"HU"},{"element":"(0040,0244)","name":"Performed Procedure Step Start Date","data":"19950522"},{"element":"(0040,0245)","name":"Performed Procedure Step Start Time","data":"161702"},{"element":"(0040,0254)","name":"Performed Procedure Step Description","data":"4dct stereo"},{"element":"(0043,0010)","name":"","data":"GEMS_PARM_01"},{"element":"(0043,1010)","name":"","data":"400"},{"element":"(0043,1012)","name":"","data":"99\\99\\99"},{"element":"(0043,1016)","name":"","data":"0"},{"element":"(0043,101E)","name":"","data":"0.000000"},{"element":"(0043,101F)","name":"","data":"0"},{"element":"(0043,1021)","name":"","data":"0"},{"element":"(0043,1025)","name":"","data":"0\\0\\0\\0\\0\\0"},{"element":"(0043,1026)","name":"","data":"0\\0\\0\\0\\0\\0\\0\\0"},{"element":"(0043,1027)","name":"","data":""},{"element":"(0043,102B)","name":"","data":"2\\0\\0\\0"},{"element":"(0043,1031)","name":"","data":"0.000000\\0.000000"},{"element":"(0043,1040)","name":"","data":"353.85443"},{"element":"(0043,1041)","name":"","data":"3600.8787"},{"element":"(0043,1042)","name":"","data":"0"},{"element":"(0043,1043)","name":"","data":"0"},{"element":"(0043,1044)","name":"","data":"0"},{"element":"(0043,1045)","name":"","data":"0"},{"element":"(0043,1046)","name":"","data":"0"},{"element":"(0043,104D)","name":"","data":"0.0"},{"element":"(0043,104E)","name":"","data":"5.00122"},{"element":"(0045,0010)","name":"","data":"GEMS_HELIOS_01"},{"element":"(0045,1001)","name":"","data":"8"},{"element":"(0045,1002)","name":"","data":"2.5"},{"element":"(0045,1003)","name":"","data":"7"},{"element":"(0045,1004)","name":"","data":"6"},{"element":"(0045,1006)","name":"","data":"INTO GANTRY"},{"element":"(0045,1007)","name":"","data":"0.0"},{"element":"(0045,1008)","name":"","data":"0"},{"element":"(0045,1009)","name":"","data":"17"},{"element":"(0045,100A)","name":"","data":"0.0"},{"element":"(0045,100B)","name":"","data":"0.0"},{"element":"(0045,100C)","name":"","data":"0"},{"element":"(0045,100D)","name":"","data":"0"},{"element":"(0045,100E)","name":"","data":"0.0"},{"element":"(0045,100F)","name":"","data":"0.0"},{"element":"(0045,1010)","name":"","data":"0"},{"element":"(0045,1011)","name":"","data":"0"},{"element":"(0045,1012)","name":"","data":"0"},{"element":"(0045,1013)","name":"","data":"10"},{"element":"(0045,1014)","name":"","data":"0"},{"element":"(0045,1015)","name":"","data":"0"},{"element":"(0045,1016)","name":"","data":"0"},{"element":"(0045,1017)","name":"","data":"0"},{"element":"(0045,1018)","name":"","data":"0"},{"element":"(0045,1021)","name":"","data":"0"},{"element":"(0045,1022)","name":"","data":"0"},{"element":"(0045,1032)","name":"","data":"0.5"}]
Extended Simple Search with Modality and Body Part Paged
The Extended Simple Search with Modality and Body Part Paged API is used to run queries for the Simple Search GUI in the NBIA client. This API uses a variety of criteria as seen in the NBIA client, as well as the pages of data the client requests. The available criteria types and their components follow. Since the simple search can take an unlimited number of criteria, each of the criteria items is appended with a number signifying its order in the query, starting with 0.
Example Extended Simple Search with Modality and Body Part Paged Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getSimpleSearchWithModalityAndBodyPartPaged" -d "criteriaType0=TimePointCriteria&eventType0=DIAGNOSIS&fromDay0=-5&toDay0=10&sortField=subject&sortDirection=descending&start=0&size=9"
The API returns the results of the search.
{ "resultSet":[ { "subjectId":"Test-5910936489", "project":"Test", "id":819200, "modalities":[ "CT" ], "bodyParts":[ "LUNG" ], "species":[ "L-877FC" ], "timepoints":{ "DIAGNOSIS":[ 1, 3 ] }, "totalNumberOfStudies":28, "totalNumberOfSeries":61, "studyIdentifiers":[ { "seriesIdentifiers":[ 917526, 917527, 917528 ], "seriesAndModality":[ ], "studyIdentifier":851979 }, { "seriesIdentifiers":[ 917529, 917530 ], "seriesAndModality":[ ], "studyIdentifier":851980 }, { "seriesIdentifiers":[ 917531, 917532 ], "seriesAndModality":[ ], "studyIdentifier":851981 } ] } ], "totalPatients":1, "bodyParts":[ { "value":"LUNG", "count":1 } ], "modalities":[ { "value":"CT", "count":1 } ], "collections":[ { "value":"Test", "count":1 } ], "species":[ { "value":"L-877FC", "count":1 } ], "maxTimepoints":{ "DIAGNOSIS":3 }, "minTimepoints":{ "DIAGNOSIS":1 }, "sort":"subject-descending" }
Image with MD5 Hash
Example Image with MD5 Hash Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN” -k "https://public.cancerimagingarchive.net/nbia-api/services/v2/getImageWithMD5Hash?SeriesInstanceUID=1.3.6.1.4.1.14519.5.2.1.6834.5010.100089621274100103247029607723"
Manifest for Simple Search
Example Manifest for Simple Search Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getManifestForSimpleSearch" -d "criteriaType0=ThirdPartyAnalysis&value0=yes&sortField=subject&sortDirection=descending&start=0&size=100"
downloadServerUrl=https://nbia.cancerimagingarchive.net/nbia-download/servlet/DownloadServlet includeAnnotation=false noOfrRetry=4 databasketId=manifest-1693254833353.tcia manifestVersion=3.0 ListOfSeriesToDownload= 1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.1264 1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.1263 1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.1261 1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.1265 1.3.6.1.4.1.5962.1.1.0.0.1548529146.50549.1262
Manifest Text
Example Manifest Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getManifestTextV2" -d "list=1.3.6.1.4.1.14519.5.2.1.6834.5010.100089621274100103247029607723&includeAnnotation=false"
"downloadServerUrl=https://nbia.cancerimagingarchive.net/nbia-download/servlet/DownloadServlet includeAnnotation=false noOfrRetry=4 databasketId=manifest-1692722233257.tcia manifestVersion=3.0 ListOfSeriesToDownload= 1.3.6.1.4.1.14519.5.2.1.6834.5010.100089621274100103247029607723"
Manifest for Text Search
This API takes a text value and generates a manifest file of series. This is an API version of the text search in the NBIA Radiology Portal GUI. See Performing a Text Search for more information.
Example getManifestForTextSearch Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -X POST "https://services.cancerimagingarchive.net/nbia-api/services/GetManifestForTextSearch" -d "textValue=CT"
downloadServerUrl=https://services.cancerimagingarchive.net/nbia-download/servlet/DownloadServlet includeAnnotation=false noOfrRetry=4 databasketId=manifest-1680987888150.tcia manifestVersion=3.0 ListOfSeriesToDownload= 1.3.6.1.4.1.9328.50.4.563784 1.3.6.1.4.1.9328.50.4.568673 1.3.6.1.4.1.9328.50.4.568676 1.3.6.1.4.1.9328.50.4.568678 1.3.6.1.4.1.9328.50.4.569267 1.3.6.1.4.1.9328.50.4.569270
Manifest from Patient Study Series
This API takes a a parameter and generates a manifest file of patient IDs that match those parameters.
This API takes the following parameters:
- patientIDs (required)
- studyUIDs (optional)
- seriesUIDs (optional)
- anyOrAll (optional)
- includeAnnotation (optional)
Example getManifestFromPatientStudySeries Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN>" -k "https://services.cancerimagingarchive.net/nbia-api/services/getManifestFromPatientStudySeries" -d "patientIDs=ISPY1_1001"
If successful, the API returns the following.
downloadServerUrl=https://nbia.cancerimagingarchive.net/nbia-download/servlet/DownloadServlet includeAnnotation=true noOfrRetry=4 databasketId=manifest-1692722426170.tcia manifestVersion=3.0 ListOfSeriesToDownload= 1.3.6.1.4.1.14519.5.2.1.7695.1700.250955243295773832626617549482 1.3.6.1.4.1.14519.5.2.1.7695.1700.360389360742427667526070655843 1.3.6.1.4.1.14519.5.2.1.7695.1700.334491271566855314830260417024 1.3.6.1.4.1.14519.5.2.1.7695.1700.658441262671287309457346305705 1.3.6.1.4.1.14519.5.2.1.7695.1700.131126392922209124942161386151
MD5 Hierarchy
Example getMD5Hierarchy Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getMD5Hierarchy" -d "Collection=ISPY1"
ce9ec0fd7cb437e5cd6b65cf358eea6a
Manufacturer Values and Counts API
Example getManufacturerValuesAndCounts Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getManufacturerValuesAndCounts?Collection=4D-Lung"
[{"criteria":"ADAC","count":"20"},{"criteria":"Varian Imaging Laboratories, Switzerland","count":"20"}]
MD5 Hash for Image
Generates an MD5 Hierarchy for a given Collection, PatientID, StudyInstanceUID, or SeriesInstanceUID, which can be compared to a previously generated hierarchy to determine if any changes have occurred to the data.
The API takes one argument:
- sopInstanceUid
Example MD5 Hash for Image Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/v2/getM5HashForImage?SOPInstanceUid=1.3.6.1.4.1.14519.5.2.1.6834.5010.129790817462380794533151446268"
f9a9afbc6a5295cead66f43a5965080d
Modality Values and Counts
The Modality Values and Counts API returns the modality values plus the subject count for the modality. It optionally takes the following parameters.
- Collection
- BodyPartExamined
Example Modality Values and Counts Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getModalityValuesAndCounts?Collection=VICTRE"
The API returns the modalities and their counts.
[{"criteria":"MG","count":"2994"}]
Restrictions for Simple Search
The Restrictions on Simple Search API returns whether any series returned by simple search has commercial restrictions.
The API takes the same parameters as the Simple Search GUI.
Example getRestrictionsForSimpleSearch Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getRestrictionsForSimpleSearch" -d "criteriaType0=ThirdPartyAnalysis&value0=yes&sortField=subject&sortDirection=descending&start=0&size=1000000"
The API returns "Yes" if there are commercial restrictions and "No" if there are not.
Series Metadata 2
The Series Metadata API allows returns the metadata needed by the client for a set of series as CSV.
Example Series Metadata 2 Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k https://services.cancerimagingarchive.net/nbia-api/services/getSeriesMetadata2" -d "list=2.25.110315838408248624082166543013557943798"
The API returns ok if successful, and the error if one occurs.
"Subject ID","Study UID","Study Description","Study Date","Series ID","Series Description","Number of images","File Size (Bytes)","Collection Name","Modality","Manufacturer","3rd Party Analysis","Data Description URI","Series Number","License Name","License URL","Date Released","Series Date","Protocol Name","Body Part Examined","Annotations Flag","Manufacturer Model Name","Software Versions","TimeStamp" "9189822998","2.25.144594706293612984382396531662084750838","CT HIP W/O CONTRAST,BILAT","1989-02-15","2.25.110315838408248624082166543013557943798","Surview Test","5","3414180","Col4","CT","Philips","NO","","5865","Creative Commons Attribution 3.0 Unported License","http://creativecommons.org/licenses/by/3.0/","","","Abd/Pelvis W/C/Abdomen/Sv","BLADDER","","Mx8000 IDT 16","3.2.0","2023-11-28 20:29:48.0"
Species Tax
The Species Tax API returns the species taxonomy and takes no parameters.
Example Species Tax Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k https://services.cancerimagingarchive.net/nbia-api/services/getSpeciesTax
The API returns the current species taxonomy.
[{"speciesCode":"447612001","speciesDescription":"Mus musculus"},{"speciesCode":"448771007","speciesDescription":"Canis lupus familiaris"},{"speciesCode":"337915000","speciesDescription":"Homo sapiens"}]
Species Values And Counts
The Get Species Values And Counts API returns the values and counts for species and takes the same parameters as the Simple Search GUI.
Example Species Values And Counts Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getSpeciesValuesAndCounts"
The API returns the values and counts for species.
[{"criteria":"337915000","count":"33793"},{"criteria":"447612001","count":"393"},{"criteria":"448771007","count":"57"}]
Study Drill Down With Series IDs
The Study Drill Down API provides the functionality in the portal where the user drills down to the studies and series associated with a given user.
The API takes a list of series to query, using the parameter "list," that is repeated for each series instance UIDs you want to retrieve.
Example Study Drill Down With Series IDs Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getStudyDrillDownWithSeriesIds" -d "list=1.3.6.1.4.1.14519.5.2.1.6834.5010.322628904903035357840500590726"
The Study Drill Down With Series Ids API returns JSON with the information to populate the drill down to study screen. There can be multiple studies.
[{"studyId":"1.3.6.1.4.1.14519.5.2.1.6834.5010.335014117706890137582032169351","date":874299600000,"description":"p4","id":221806615,"study_id":null,"excludeCommercial":null,"seriesList":[{"seriesNumber":"500","seriesUID":"1.3.6.1.4.1.14519.5.2.1.6834.5010.322628904903035357840500590726","numberImages":50,"modality":"CT","manufacturer":"Varian Imaging Laboratories, Switzerland","annotationsFlag":false,"annotationsSize":0,"patientId":"100_HM10395","patientPkId":"221773824","studyId":"1.3.6.1.4.1.14519.5.2.1.6834.5010.335014117706890137582032169351","studyPkId":221806615,"totalSizeForAllImagesInSeries":26405888,"project":"4D-Lung","description":"P4^P100^S100^I0, Gated, 0.0%","dataProvenanceSiteName":null,"manufacturerModelName":null,"softwareVersion":null,"maxFrameCount":"0","studyDate":null,"studyDesc":null,"bodyPartExamined":"LUNG","study_id":null,"thirdPartyAnalysis":null,"descriptionURI":"https://doi.org/10.7937/K9/TCIA.2016.ELN8YGLE","sopClassUID":null,"licenseName":null,"licenseUrl":null,"commercialRestrictions":false,"seriesId":"1.3.6.1.4.1.14519.5.2.1.6834.5010.322628904903035357840500590726","studyDateString":"","seriesPkId":221872172,"exactSize":26405888}]}]
Thumbnail
The Get Thumbnail API returns the DICOM tags and values associated with the image.
- seriesUID
- objectUID
Example Thumbnail Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -k "https://services.cancerimagingarchive.net/nbia-api/services/getThumbnail" -d "seriesUID=1.3.6.1.4.1.14519.5.2.1.3023.4024.536949365601910993926257264114&objectUID=1.3.6.1.4.1.14519.5.2.1.3023.4024.822829852603295162591249163632" --output Thumbnail.jpg
The API returns a JPG thumbnail.
" % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 13757 0 13608 100 149 13608 149 0:00:01 --:--:-- 0:00:01 14435"
Text Search
The text search API is used to run queries for Text Search in the portal. The text search takes an argument, textValue.
Example Text Search Query
curl -H "Authorization:Bearer YOUR_ACCESS_TOKEN" -X POST "https://services.cancerimagingarchive.net/nbia-api/services/getTextSearch" -d "textValue=mouse"
Note that the returned JSON now includes the "hit" that was found by the Solr search engine.
[{"subjectId":"292921-168-R-1404","project":"PDMR-292921-168-R","id":716669003,"totalNumberOfStudies":4,"totalNumberOfSeries":7,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[716734938,716734939],"seriesAndModality":[],"studyIdentifier":716701807},{"seriesIdentifiers":[716734940,716734941],"seriesAndModality":[],"studyIdentifier":716701808},{"seriesIdentifiers":[716734942,716734943],"seriesAndModality":[],"studyIdentifier":716701809},{"seriesIdentifiers":[716734944],"seriesAndModality":[],"studyIdentifier":716701810}]},{"subjectId":"292921-168-R-1405","project":"PDMR-292921-168-R","id":679608323,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[679706630,679706631],"seriesAndModality":[],"studyIdentifier":679641091},{"seriesIdentifiers":[716734890,716734891],"seriesAndModality":[],"studyIdentifier":716701780},{"seriesIdentifiers":[716734892],"seriesAndModality":[],"studyIdentifier":716701781},{"seriesIdentifiers":[716734893,716734894],"seriesAndModality":[],"studyIdentifier":716701782},{"seriesIdentifiers":[716734895,716734896],"seriesAndModality":[],"studyIdentifier":716701783}]},{"subjectId":"292921-168-R-1406","project":"PDMR-292921-168-R","id":716668994,"totalNumberOfStudies":4,"totalNumberOfSeries":7,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[716734867],"seriesAndModality":[],"studyIdentifier":716701766},{"seriesIdentifiers":[716734868,716734869],"seriesAndModality":[],"studyIdentifier":716701767},{"seriesIdentifiers":[716734870,716734871],"seriesAndModality":[],"studyIdentifier":716701768},{"seriesIdentifiers":[716734872,716734873],"seriesAndModality":[],"studyIdentifier":716701769}]},{"subjectId":"292921-168-R-1407","project":"PDMR-292921-168-R","id":679608326,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[679706636,679706637],"seriesAndModality":[],"studyIdentifier":679641094},{"seriesIdentifiers":[716734966,716734967],"seriesAndModality":[],"studyIdentifier":716701823},{"seriesIdentifiers":[716734968,716734969],"seriesAndModality":[],"studyIdentifier":716701824},{"seriesIdentifiers":[716734970,716734971],"seriesAndModality":[],"studyIdentifier":716701825},{"seriesIdentifiers":[716734972],"seriesAndModality":[],"studyIdentifier":716701826}]},{"subjectId":"292921-168-R-1408","project":"PDMR-292921-168-R","id":679608325,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[679706634,679706635],"seriesAndModality":[],"studyIdentifier":679641093},{"seriesIdentifiers":[716734981,716734982],"seriesAndModality":[],"studyIdentifier":716701832},{"seriesIdentifiers":[716734983,716734984],"seriesAndModality":[],"studyIdentifier":716701833},{"seriesIdentifiers":[716734985],"seriesAndModality":[],"studyIdentifier":716701834},{"seriesIdentifiers":[716734986,716734987],"seriesAndModality":[],"studyIdentifier":716701835}]},{"subjectId":"292921-168-R-1409","project":"PDMR-292921-168-R","id":716668996,"totalNumberOfStudies":4,"totalNumberOfSeries":7,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[716734875,716734876],"seriesAndModality":[],"studyIdentifier":716701771},{"seriesIdentifiers":[716734877,716734878],"seriesAndModality":[],"studyIdentifier":716701772},{"seriesIdentifiers":[716734879,716734880],"seriesAndModality":[],"studyIdentifier":716701773},{"seriesIdentifiers":[716734881],"seriesAndModality":[],"studyIdentifier":716701774}]},{"subjectId":"292921-168-R-1410","project":"PDMR-292921-168-R","id":679608327,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[679706638,679706639],"seriesAndModality":[],"studyIdentifier":679641095},{"seriesIdentifiers":[716734918,716734919],"seriesAndModality":[],"studyIdentifier":716701796},{"seriesIdentifiers":[716734920,716734921],"seriesAndModality":[],"studyIdentifier":716701797},{"seriesIdentifiers":[716734922],"seriesAndModality":[],"studyIdentifier":716701798},{"seriesIdentifiers":[716734923,716734924],"seriesAndModality":[],"studyIdentifier":716701799}]},{"subjectId":"292921-168-R-1411","project":"PDMR-292921-168-R","id":679608321,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[679706626,679706627],"seriesAndModality":[],"studyIdentifier":679641089},{"seriesIdentifiers":[716734996],"seriesAndModality":[],"studyIdentifier":716701841},{"seriesIdentifiers":[716734997,716734998],"seriesAndModality":[],"studyIdentifier":716701842},{"seriesIdentifiers":[716734999,716735000],"seriesAndModality":[],"studyIdentifier":716701843},{"seriesIdentifiers":[716735001,716735002],"seriesAndModality":[],"studyIdentifier":716701844}]},{"subjectId":"292921-168-R-1412","project":"PDMR-292921-168-R","id":716668993,"totalNumberOfStudies":4,"totalNumberOfSeries":7,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[716734860],"seriesAndModality":[],"studyIdentifier":716701762},{"seriesIdentifiers":[716734861,716734862],"seriesAndModality":[],"studyIdentifier":716701763},{"seriesIdentifiers":[716734863,716734864],"seriesAndModality":[],"studyIdentifier":716701764},{"seriesIdentifiers":[716734865,716734866],"seriesAndModality":[],"studyIdentifier":716701765}]},{"subjectId":"292921-168-R-1413","project":"PDMR-292921-168-R","id":679608328,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[679706640,679706641],"seriesAndModality":[],"studyIdentifier":679641096},{"seriesIdentifiers":[716734904,716734905],"seriesAndModality":[],"studyIdentifier":716701788},{"seriesIdentifiers":[716734906,716734907],"seriesAndModality":[],"studyIdentifier":716701789},{"seriesIdentifiers":[716734908],"seriesAndModality":[],"studyIdentifier":716701790},{"seriesIdentifiers":[716734909,716734910],"seriesAndModality":[],"studyIdentifier":716701791}]},{"subjectId":"292921-168-R-1414","project":"PDMR-292921-168-R","id":716669004,"totalNumberOfStudies":4,"totalNumberOfSeries":7,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[716734945],"seriesAndModality":[],"studyIdentifier":716701811},{"seriesIdentifiers":[716734946,716734947],"seriesAndModality":[],"studyIdentifier":716701812},{"seriesIdentifiers":[716734948,716734949],"seriesAndModality":[],"studyIdentifier":716701813},{"seriesIdentifiers":[716734950,716734951],"seriesAndModality":[],"studyIdentifier":716701814}]},{"subjectId":"292921-168-R-1415","project":"PDMR-292921-168-R","id":679608329,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[679706642,679706643],"seriesAndModality":[],"studyIdentifier":679641097},{"seriesIdentifiers":[716734988,716734989],"seriesAndModality":[],"studyIdentifier":716701836},{"seriesIdentifiers":[716734990,716734991],"seriesAndModality":[],"studyIdentifier":716701837},{"seriesIdentifiers":[716734992,716734993],"seriesAndModality":[],"studyIdentifier":716701838},{"seriesIdentifiers":[716734994],"seriesAndModality":[],"studyIdentifier":716701839}]},{"subjectId":"292921-168-R-1416","project":"PDMR-292921-168-R","id":679608324,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> Overview","studyIdentifiers":[{"seriesIdentifiers":[679706632,679706633],"seriesAndModality":[],"studyIdentifier":679641092},{"seriesIdentifiers":[716734959,716734960],"seriesAndModality":[],"studyIdentifier":716701819},{"seriesIdentifiers":[716734961],"seriesAndModality":[],"studyIdentifier":716701820},{"seriesIdentifiers":[716734962,716734963],"seriesAndModality":[],"studyIdentifier":716701821},{"seriesIdentifiers":[716734964,716734965],"seriesAndModality":[],"studyIdentifier":716701822}]},{"subjectId":"292921-168-R-1417","project":"PDMR-292921-168-R","id":716668999,"totalNumberOfStudies":4,"totalNumberOfSeries":7,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> 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Overview","studyIdentifiers":[{"seriesIdentifiers":[716734974],"seriesAndModality":[],"studyIdentifier":716701828},{"seriesIdentifiers":[716734975,716734976],"seriesAndModality":[],"studyIdentifier":716701829},{"seriesIdentifiers":[716734977,716734978],"seriesAndModality":[],"studyIdentifier":716701830},{"seriesIdentifiers":[716734979,716734980],"seriesAndModality":[],"studyIdentifier":716701831}]},{"subjectId":"292921-168-R-1419","project":"PDMR-292921-168-R","id":679608330,"totalNumberOfStudies":5,"totalNumberOfSeries":9,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> 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Overview","studyIdentifiers":[{"seriesIdentifiers":[716734897,716734898],"seriesAndModality":[],"studyIdentifier":716701784},{"seriesIdentifiers":[716734899],"seriesAndModality":[],"studyIdentifier":716701785},{"seriesIdentifiers":[716734900,716734901],"seriesAndModality":[],"studyIdentifier":716701786},{"seriesIdentifiers":[716734902,716734903],"seriesAndModality":[],"studyIdentifier":716701787}]},{"subjectId":"425362-245-T-1505","project":"PDMR-425362-245-T","id":737935370,"totalNumberOfStudies":4,"totalNumberOfSeries":7,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> 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Overview","studyIdentifiers":[{"seriesIdentifiers":[738000913,738000916],"seriesAndModality":[],"studyIdentifier":737968142},{"seriesIdentifiers":[738000914],"seriesAndModality":[],"studyIdentifier":737968143},{"seriesIdentifiers":[738000915,738000918],"seriesAndModality":[],"studyIdentifier":737968144},{"seriesIdentifiers":[738000917,738000919],"seriesAndModality":[],"studyIdentifier":737968145},{"seriesIdentifiers":[738000920,738000921],"seriesAndModality":[],"studyIdentifier":737968146},{"seriesIdentifiers":[738000922,738000925],"seriesAndModality":[],"studyIdentifier":737968147}]},{"subjectId":"425362-245-T-1507","project":"PDMR-425362-245-T","id":737935372,"totalNumberOfStudies":4,"totalNumberOfSeries":7,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> 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Overview","studyIdentifiers":[{"seriesIdentifiers":[738000979,738000986],"seriesAndModality":[],"studyIdentifier":737968179},{"seriesIdentifiers":[738000982],"seriesAndModality":[],"studyIdentifier":737968180},{"seriesIdentifiers":[738000983,738000984],"seriesAndModality":[],"studyIdentifier":737968181}]},{"subjectId":"425362-245-T-1513","project":"PDMR-425362-245-T","id":737935378,"totalNumberOfStudies":4,"totalNumberOfSeries":7,"hit":"<em>seriesDesc</em>: PDM <strong>Mouse</strong> 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