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Summary

Excerpt

Prostate cancer T1- and T2-weighted magnetic resonance images (MRIs) were acquired on a 1.5 T Philips Achieva by combined surface and endorectal coil

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, including dynamic contrast-enhanced images obtained prior to, during and after I.V. administration of 0.1 mmol/kg

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body weight of Gadolinium-DTPA (pentetic acid). For scientific inquiries relating to the data-set, please contact Drs. C. Carl Jaffe

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(carl.jaffe@bmc.org) or Nicolas Bloch (nicolas.bloch@bmc.org).

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Supporting Documentation and metadata

 

Localtab Group


Localtab
activetrue
titleData Access

Data Access

Click the Download button to save a ".tcia" manifest file to your computer, which you must open with the NBIA Data Retriever. Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents.

Data TypeDownload all or Query/Filter
Images (DICOM, 5.6GB)

Image Added  Image Added

(Download requires the NBIA Data Retriever .)

Clinical Metadata (XLS)
Multi-component NRRD Segmentations (zip)
Seminal vesicles (SV) and neurovascular bundle (NVB) Segmentations (zip)

Click the Versions tab for more info about data releases.

Third Party Analyses of this Dataset

TCIA encourages the community to publish your analyses of our datasets. Below is a list of such third party analyses published using this Collection:


Localtab
titleDetailed Description

Detailed Description

Collection Statistics

 

Modalities

MR (T1, T2, and DCE sequences)

Number of Participants

92

Number of Studies

92

Number of Series

368

Number of Images

32,537

Image Size (GB)5.6

 

Metadata

Corresponding clinical metadata (XLS format) and 3D segmentation files (NRRD format) are offered as a supplement to this image collection.

  • Prostate-Diagnosis metadata (updated 2012-05-07) - The XLS file contains pathology biopsy and excised gland tissue reports and the MRI radiology report for most

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  • subjects.
  • NRRD 3D segmentations (2 separate sets of segmentations available)
    • NRRD segmentations (updated 2012-05-07)- The software used to generate the NRRD files on the MR T2W_TSE_AX image sequences

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    • was 3DSlicer. The 3DSlicer NRRD files allow visualization and downstream analysis of the following prostate components: prostate gland boundary; internal capsule; central gland, peripheral zone; seminal vesicles; urethra; cancer – dominant nodule; neurovascular bundle; penile bulb; ejaculatory duct; veru-montanum; and rectum. Presently, there are available mark-ups of 5 cases (case extension #'s 0006, 0014, 0019, 0021, 0048)

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    • . These markups are made public courtesy (and copyrighted by) Dr. Nicolas Bloch as portions of his forthcoming online prostate cancer image atlas.

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Shared Lists

  • Prostate-Diagnosis Collection: 2012-03-15 Update - Use this Shared List to obtain only the newer cases added on 2012-03-15.
  • Prostate-Diagnosis Collection: 2012-05-22 Update - Use this Shared List to obtain only the newer cases added on 2012-05-22.

Note: See Section 3.7 of TCIA User Guide for help with Shared Lists.

Data Access

This collection originally consisted of 12 cases submitted 2011-09-21. An additional 25 new cases were added 2012-03-15, along with corresponding XLS metadata.  On 2012-05-22 there were 16 more cases added, including XLS metadata and 3D NRRD segmentations.

Collection Statistics

 

Modalities

MR (T1, T2, and DCE sequences)

Number of Patients

53

Number of Studies

53

Number of Series

208

Number of Images

18,584

You can view and download these images on the Cancer Imaging Archive by selecting the Prostate-Diagnosis collection. If you are unsure how to download this Collection view our quick guide on Searching by Collection or you can refer to our The Cancer Imaging Archive User's Guide for more detailed instructions on using the site.


Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy 

Public collection license
Info
titleData Citation

Bloch, B. Nicolas, Jain, Ashali, & Jaffe, C. Carl. (2015). Data From PROSTATE-DIAGNOSIS. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2015.FOQEUJVT


Info
titleTCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)

Other Publications Using This Data

TCIA maintains a list of publications which leverage our data. At this time we are not aware of any publications based on this data. If you have a publication you'd like to add please contact the TCIA Helpdesk.


Localtab
titleVersions

Version 1 (Current): Updated 2013/01/30

Data TypeDownload all or Query/Filter
Images (DICOM, 5.6GB)

Image Added  Image Added

(Download requires the NBIA Data Retriever .)

Clinical Metadata (XLS)
Multi-component NRRD Segmentations (zip)
NCI ISBI Challenge - Segmentations of central gland and the peripheral zone (zip)
Seminal vesicles (SV) and neurovascular bundle (NVB) Segmentations (zip)