The Cancer Imaging Archive (TCIA) Public Access

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  • MiMM_SBILab Dataset: Microscopic Images of Multiple Myeloma (MiMM_SBILab)

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Summary

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delay5
locationhttps://www.cancerimagingarchive.net/collection/mimm_sbilab/
Excerpt

Microscopic images were captured from bone marrow aspirate slides of patients diagnosed with multiple myeloma as per the standard guidelines. Slides were stained using Jenner- Giemsa stain. Images were captured at 1000x magnification using Nikon Eclipse-200 microscope equipped with a digital camera. Images were captured in raw BMP format with a size of 2560x1920 pixels. In all, this dataset consists of 85 images. All these 85 images were stain normalized using our in-house methodology before being used for segmentation. These stain normalized images have been provided as the annotated dataset with plasma cells marked in all image slides contained in a presentation for the ready reference of readers.

Additional Notes

This collection has also been uploaded to the Harvard Blood Cancer Dataverse website. Please refer to DOI 10.7910/DVN/XCX7ST for more information.

Additional Publications using this dataset:

  • Ritu Gupta, Pramit Mallick, Rahul Duggal, Anubha Gupta, and Ojaswa Sharma, "Stain Color Normalization and Segmentation of Plasma Cells in Microscopic Images as a Prelude to Development of Computer Assisted Automated Disease Diagnostic Tool in Multiple Myeloma," 16th International Myeloma Workshop (IMW), India, March 2017 https://doi.org/10.1016/j.clml.2017.03.178


Localtab Group



Localtab
activetrue
titleData Access

Data Access


Data TypeDownload all or Query/FilterLicense
Slide Images (BMP, 1.27GB)


Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjUyOCIsInBhc3Njb2RlIjoiNzYxYjNhOWFjNDgyOWM0NDQ0NTFhYTU2NjVlM2Y1NjUwYjM5NDRkMCIsInBhY2thZ2VfaWQiOiI1MjgiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0=



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labelSearch
urlhttps://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:mimm_sbilab



(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

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Annotated plasma cell images (PDF, 12.67 MB)


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urlhttps://wiki.cancerimagingarchive.net/download/attachments/52756988/Annotated_PPT_MM_Data.pdf?version=1&modificationDate=1615575877898&api=v2


 

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Localtab
titleDetailed Description

Detailed Description


Image Statistics

Pathology Imaging Statistics

Modalities

Pathology

Number of Participants

5

Number of Studies

5

Number of Images

85

Images Size (GB)1.27






Localtab
titleCitations & Data Usage Policy

Citations & Data Usage Policy

Tcia limited license policy

Info
titleData Citation

Gupta, R., & Gupta, A. (2019). MiMM_SBILab Dataset: Microscopic Images of Multiple Myeloma [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/tcia.2019.pnn6aypl


Info
titlePublication Citation

Gupta, A., Duggal, R., Gehlot, S., Gupta, R., Mangal, A., Kumar, L., Thakkar, N., & Satpathy, D. (2020). GCTI-SN: Geometry-inspired chemical and tissue invariant stain normalization of microscopic medical images. Medical Image Analysis, 65, 101788. https://doi.org/10.1016/j.media.2020.101788


Info
titlePublication Citation

Gupta, A., Mallick, P., Sharma, O., Gupta, R., & Duggal, R. (2018). PCSeg: Color model driven probabilistic multiphase level set based tool for plasma cell segmentation in multiple myeloma. PLOS ONE, 13(12), e0207908. https://doi.org/10.1371/journal.pone.0207908


Info
titleTCIA Citation

Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. Journal of Digital Imaging, 26(6), 1045–1057. https://doi.org/10.1007/s10278-013-9622-7


Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact TCIA's Helpdesk.




Localtab
titleVersions

Version 1 (Current): Updated 2019/03/25


Data TypeDownload all or Query/Filter
Images (BMP, 1.27GB)
Tcia button generator
urlhttps://faspex.cancerimagingarchive.net/aspera/faspex?context=eyJyZXNvdXJjZSI6InBhY2thZ2VzIiwidHlwZSI6ImV4dGVybmFsX2Rvd25sb2FkX3BhY2thZ2UiLCJpZCI6IjUyOCIsInBhc3Njb2RlIjoiNzYxYjNhOWFjNDgyOWM0NDQ0NTFhYTU2NjVlM2Y1NjUwYjM5NDRkMCIsInBhY2thZ2VfaWQiOiI1MjgiLCJlbWFpbCI6ImhlbHBAY2FuY2VyaW1hZ2luZ2FyY2hpdmUubmV0In0=


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labelSearch
urlhttps://pathdb.cancerimagingarchive.net/imagesearch?f[0]=collection:mimm_sbilab


(Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) 

Annotated plasma cell images (PDF)
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urlhttps://wiki.cancerimagingarchive.net/download/attachments/52756988/Annotated_PPT_MM_Data.pdf?version=1&modificationDate=1615575877898&api=v2








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