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Summary

The TCGA-KIRP data collection is part of a larger effort to enhance the The Cancer Genome Atlas (TCGA) data set with characterized radiological images.  The Cancer Imaging Program (CIP) with the cooperation of several of the TCGA tissue-contributing institutions has archived a large portion of the radiological images of the genetically-analyzed Kidney renal papillary cell carcinoma (KIRP) cases.Clinical, genetic, and pathology data resides in the TCGA data portal while the radiological data is stored on The Cancer Imaging Archive (TCIA).   The data utilizes the same TCGA patient identifiers in both repositories, allowing researchers to explore the correlations between tissue genotype and radiological phenotype. This Collection within TCIA is related to the KIRP disease type within TCGA.

We would like to acknowledge the individuals and institutions that have provided data for this collection:

  • National Cancer Institute, Bethesda, MD - Special thanks to Marston Linehan, M.D. and Rabindra Gautam from the Urologic Oncology Branch.
  • University of North Carolina, Chapel Hill, NC - Special thanks to J. Keith Smith, M.D.,Ph.D and Shanah Kirk.

CIP TCGA Radiology Initiative

Data Access

Imaging Data

You can view and download these images on The Cancer Imaging Archive by logging in to TCIA and selecting the TCGA-KIRP collection.

Collection Statistics

(updated 2013/11/25)

Modalities

 

Number of Patients

20

Number of Studies

 

Number of Series

 

Number of Images

 

If you are unsure how to download this Collection please view our quick guide on Searching by Collection or refer to our The Cancer Imaging Archive User's Guide for more detailed instructions on using the site.

Metadata

The TCGA data portal has extensive clinical and genomic data which can be matched to the patient identifiers of the images here in TCIA.  Here are just a sample of some of the clinical data types available:

 

bcr_patient_barcode,age_at_initial_pathologic_diagnosis,days_to_birth,days_to_death,days_to_form_completion,days_to_initial_pathologic_diagnosis,
days_to_last_followup,days_to_last_known_alive,distant_metastasis_pathologic_spread,drugs,eastern_cancer_oncology_group,erythrocyte_sedimentation_rate_result,
gender,hemoglobin_result,histological_type,informed_consent_verified,karnofsky_performance_score,lactate_dehydrogenase_result,laterality,
lymphnode_pathologic_spread,lymphnodes_examined_prior_presentation,number_of_lymphnodes_examined,number_of_lymphnodes_positive,performance_status_scale_timing,
person_neoplasm_cancer_status,platelet_qualitative_result,pretreatment_history,primary_tumor_pathologic_spread,prior_diagnosis,radiations,serum_calcium_result,
tumor_grade,tumor_stage,tumor_tissue_site,vital_status,white_cell_count_result,year_of_initial_pathologic_diagnosis

Verbose explanations of the clinical data can be found on the Biospecimen Core Resource Clinical Data Forms linked below:

 

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