Summary
Details on image acquisition and processing:
Automated imaging was performed on a Keyence BZ-X710 microscope using a CFI Plan Apo λ 20x/0.75 objective (Nikon), in high-resolution mode, with a lateral resolution of 377.44 nm/pixel. Processed images labeled with “montage” only have half of that resolution, resulting in a 4x smaller image size (used for stitching of large tissue microarrays).
Acknowledgement
This work would not have been possible without the support and efforts of many individuals and organizations.
- A complete list of acknowledgements can be found here.
Data Access
Data Type | Download all or Query/Filter | License |
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Tissue Slide Images (TIFF, 2.0TB) | (Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) | |
Clinical data: Multi-tumor TMA composition (XLS, 13 kB) | ||
Clinical data: CRC TMA patient annotation (XLS, 19 kB) |
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Detailed Description
Image Statistics | |
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Modalities | Pathology |
Number of Subjects | 35 |
Number of Images | 200 |
Images Size (TB) | 2.0 |
High-dimensional CODEX images (hyperstacks of immunofluorescence images)
Citations & Data Usage Policy
Users must abide by the TCIA Data Usage Policy and Restrictions. Attribution should include references to the following citations:
Data Citation
Schürch, C. M., Bhate, S., Barlow, G., Phillips, D., Noti, L., Zlobec, I., Chu, P., Black, S., Demeter, J., McIlwain, D., Samusik, N., Goltsev, Y., & Nolan, G. (2020). High-dimensional imaging of colorectal carcinoma and other tumors with 50+ markers [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.2020.FQN0-0326
Publication Citation
Schürch et al., Coordinated Cellular Neighborhoods Orchestrate Antitumoral Immunity at the Colorectal Cancer Invasive Front, Cell (2020), https://doi.org/10.1016/j.cell.2020.07.005
TCIA Citation
Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7
Other Publications Using This Data
TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact TCIA's Helpdesk.
Version 1 (Current): Updated 2020/08/05
Data Type | Download all or Query/Filter |
---|---|
Images (TIFF, 2.0TB) | |
Clinical data: Multi-tumor TMA composition (XLS, 13 kB) | |
Clinical data: CRC TMA patient annotation (XLS, 19 kB) |