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Summary

A large dataset of dynamic contrast-enhanced magnetic resonance images of the breast for breast cancer patients. Tumors annotated by radiologists. Extensive meta-data including patient demographics, treatment, outcomes, pathology, genomics.

This dataset is the dataset used in the following paper:

Related article

Saha, A., Harowicz, M. R., Grimm, L. J., Kim, C. E., Ghate, S. V., Walsh, R., & Mazurowski, M. A. (2018). A machine learning approach to radiogenomics of breast cancer: a study of 922 subjects and 529 DCE-MRI features. British journal of cancer, 119(4), 508-516. https://doi.org/10.1038/s41416-018-0185-8

The dataset contains four components: (1) DICOM Images, (2) Annotation_Boxes, (3) Clinical_and_Other_Features, and (4) Imaging_Features.

(1) DICOM Images
Breast MRI images of 922 patients, inside the folder of each patient there are the following sequences: fat saturated pre-contrast sequence, fat saturated post-contrast sequences, and non-fat saturated T1 weighted sequence.

(2) Annotation_Boxes
Tumor annotations in the form of boxes drawn by radiologists, six values in the spreadsheet represent the location of the start row, end row, start column, end column, start slice, and end slice of the box. The annotation boxes
can be applied directly to pre and post sequences.

(3) Clinical and Other Features
A spreadsheet containing demographic, clinical, pathology, outcomes, genomic, and other information for the patients. The legend and column explanation are included in the spreadsheet (different tabs).

(4) Imaging features
A spreadsheet that contains 529 imaging features extracted from the images. These are the features that were used in the paper listed above (Saha et al., BJR 2018).



Acknowledgements

We would like to acknowledge the individuals and institutions that have provided data for this collection:

  • Hospital/Institution Name city, state, country - Special thanks to First Last Names, degree PhD, MD, etc from the Department of xxxxxx, Additional Names from same location.

  • Continue with any names from additional submitting sites if collection consists of more that one.

Data Access

Click the  Download button to save to your local storage. Click the Search button to open our Data Portal, where you can browse the data collection and/or download a subset of its contents.

Data TypeDownload all or Query/Filter
Images (DICOM, XX.X GB)

   

(Requires NBIA Data Retriever .)

Clinical and Other Features (XLSX)

  

Annotation Boxes (XLSX)

Imaging features (XLSX, 6.6 MB)

Click the Versions tab for more info about data releases.

Detailed Description

Image Statistics


Modalities

MR

Number of Participants

922

Number of Studies


Number of Series

5,304

Number of Images


Images Size (GB)

Citations & Data Usage Policy

Add any special restrictions in here.

Users of this data must abide by the TCIA Data Usage Policy and the Creative Commons Attribution-NonCommercial 4.0 International License under which it has been published. Attribution should include references to the following citations:
 

Data Citation

Mazurowski M., Saha A., Harowicz M., Grimm L., Weng J. (2020) Dynamic contrast-enhanced magnetic resonance images of breast cancer patients with tumor locations [ Dataset]. The Cancer Imaging Archive. https://doi.org/   < Dataset DOI coming soon> 

Source Publication

Saha, A., Harowicz, M. R., Grimm, L. J., Kim, C. E., Ghate, S. V., Walsh, R., & Mazurowski, M. A. (2018). A machine learning approach to radiogenomics of breast cancer: a study of 922 subjects and 529 DCE-MRI features. British journal of cancer, 119(4), 508-516. DOI: https://doi.org/10.1038/s41416-018-0185-8

TCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: https://doi.org/10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.

Version 1 (Current): Updated 2020/mm/dd

Data TypeDownload all or Query/Filter
Images (DICOM, xx.x GB)

   

(Requires NBIA Data Retriever .)

Clinical and Other Features (XLSX)

  

Annotation Boxes (XLSX)

Imaging features (XLSX, 6.6 MB)

Added new subjects.

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