Data Access
Data Type | Download all or Query/Filter | License |
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Tissue Slide Images (SVS, 113.29 GB) | (Download and apply the IBM-Aspera-Connect plugin to your browser to retrieve this faspex package) |
Click the Versions tab for more info about data releases.
Additional Resources for this Dataset
The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.
- Imaging Data Commons (IDC) (Imaging Data)
- Proteomic Data Commons (PDC) (Proteomic & Clinical Data)
- Genomic Data Commons (GDC) (Genomic & Clinical Data)
Detailed Description
Pathology Image Statistics | |
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Modalities | Pathology |
Number of Participants | 134 |
Number of Images | 642 |
Images Size (GB) | 113.29 |
Accessing the Proteomic & Genomic Clinical Data
To access/download the clinical data on the Proteomic Data Commons (PDC) and Genomic Data Commons (GDC), once you have identified the data of your interest, move to the 'Clinical' tab on the browse page. Select the checkbox to select a specific row, all rows on the page or all pages and click the export clinical manifest button in CSV or TSV format on the GDC, or TSV or JSON format on the PDC.
A Note about TCIA and CPTAC Subject Identifiers
A subject with radiology and pathology images stored in TCIA is identified with a de-identified project Patient ID that is identical to the Patient ID of the same subject with clinical, proteomic, and/or genomic data stored in other CPTAC databases and web sites.
Citations & Data Usage Policy
Users must abide by the TCIA Data Usage Policy and Restrictions. Attribution should include references to the following citations:
Acknowledgement
The CPTAC program requests that publications using data from this program include the following statement: “Data used in this publication were generated by the National Cancer Institute Clinical Proteomic Tumor Analysis Consortium (CPTAC).”
Data Citation
National Cancer Institute Clinical Proteomic Tumor Analysis Consortium (CPTAC). (2020). The Clinical Proteomic Tumor Analysis Consortium Breast Invasive Carcinoma Collection (CPTAC-BRCA) (Version 1) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.CAEM-YS80
TCIA Citation
Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045–1057). Springer Science and Business Media LLC. https://doi.org/10.1007/s10278-013-9622-7
Other Publications Using This Data
TCIA maintains a list of publications which leverage TCIA data. If you have a publication you'd like to add please contact TCIA's Helpdesk.
Version 1 (Current) : 2021/02/02
Data Type | Download all or Query/Filter |
---|---|
Tissue Slide Images (SVS, 113.29 GB) | |
Clinical Data (external) | |
Proteomics Data (external) | |
Genomic Data |