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The tcia_utils package contains functions to simplify common tasks one might perform when interacting with The Cancer Imaging Archive (TCIA) via Python. If you are using R, please try using this package with reticulate (see example below). Issues with this package should be submitted at https://github.com/kirbyju/tcia_utils/issues. Example notebooks demonstrating tcia_utils functionality can be found at https://github.com/kirbyju/TCIA_Notebooks.
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from tcia_utils import datacite |
Using tcia_utils with reticulate in R
If you prefer R to Python, tcia_utils can be used with reticulate. Here's an example:
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# install reticulate first if you haven't already
install.packages("reticulate")
# load reticulate
library(reticulate)
# install tcia_utils
py_install("tcia_utils")
# import tcia_utils
nbia <- import("tcia_utils.nbia") # Equivalent to `from tcia_utils import nbia`
# then you can call its functions directly
results <- tcia$your_function()
print(results)
# e.g. Equivalent to `nbia.getCollections()`
collections <- nbia$getCollections() |
TCIA Data Usage Policy
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