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Summary

This dataset consists of unenhanced Chest CT images of COVID-19 infection at the point of care in an outbreak setting with NIFTI files without annotations or bounding boxes. The images were retrospectively acquired after CT of patients with RT-PCR confirmation for the presence of SARS-CoV-2.

NIFTI CT images were converted from DICOM images. CT reconstruction algorithm was soft tissue without intravenous contrast.  

Patients presented to a health care setting with either symptoms &/or exposure to an infected patient, &/or travel history to an outbreak region. All patients had a positive RT-PCR for SARS-CoV-2 from a sample obtained within 1 day of the initial CT. There may be follow-up versions of this data set which include more sources of CT data or metadata, or annotated data to potentially make this dataset a useful tool and resource for developing algorithms for medical applications or data analysis challenges.

A multidisciplinary team trained several models using portions of this data set (along with manually annotated images and other data &/or other CT’s). A classification model derived in part from portions of this data (& other data) can be found at: https://wwwXXX  or [DOI pubmed PMID].EMBARGOED FOR NOW / WILL PROVIDE WHEN EMBARGO LIFTED

Models partly derived from portions of this (& other) data may be found at:   https://ngc.nvidia.com/catalog/resources/nvidia:clara:clara_ai_covid19_pipeline

A web-based research-only model (website for research use only) has CT drag-and-drop functionality. Upload of CT yields a return email that contains the results. This model is also partly derived from portions of this (& other) data: https://marketplace.arterys.com/model/nvidiacovidCT.

Acknowledgements

  • The Imaging AI in COVID team would like to acknowledge the following individuals who supported this multi-disciplinary multi-national team effort:

    Peng An, Sheng Xu, Evrim B Turkbey, Stephanie A Harmon, Thomas H Sanford, Amel Amalou, Michael Kassin, Nicole Varble, Maxime Blain, Dilara Long, Dima Hammoud, Ashkan Malayeri, Elizabeth Jones, Holger Roth, Ziyue Xu, Dong Yang, Andriy Myronenko, Victoria Anderson, Mona Flores, Francesca Patella, Maurizio Cariati, Kaku Tamura, Hirofumi Obinata, Hitoshi Mori, Ulas Bagci, Daguang Xu, Hayet Amalou, Robert Suh,  John Gallin, Steve Holland, Bruce Tromberg, Tom Misteli, Bill Dahut, Gianpaolo Carrafiello, Baris Turkbey, Bradford J Wood.

Data Access

Data TypeDownload all or Query/Filter

Images (NIfTI, XX.X GB)

(Download requires the NBIA Data Retriever)

Clinical data (CSV)

Click the Versions tab for more info about data releases.

Please contact help@cancerimagingarchive.net  with any questions regarding usage.

Detailed Description

Image Statistics


Modalities


Number of Patients


Number of Studies


Number of Series


Number of Images


Images Size (GB)

<< Add any additional information as needed below. Likely would be something from site. >>


Citations & Data Usage Policy

Users of this data must abide by the TCIA Data Usage Policy and the Creative Commons Attribution 4.0 International License under which it has been published. Attribution should include references to the following citations:

Users of this data must abide by the TCIA Data Usage Policy and the Creative Commons Attribution-NonCommercial 4.0 International License under which it has been published. Attribution should include references to the following citations:

Data Citation

An P, Xu S, Harmon SA, Turkbey EB, Sanford TH, Amalou A, Kassin M, Varble N, Blain M, Anderson V, Patella F, Carrafiello G, Turkbey BT, Wood BJ: (2020) Chest CT Dataset for COVID-19 from Acute and Early SARS-CoV-2 Infection [Data set]. The Cancer Imaging Archive. https://doi.org/XXX.

Publication Citation

Publication under development.

Acknowledgement


TCIA Citation

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7

Other Publications Using This Data

TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you'd like to add please contact the TCIA Helpdesk.

Version 1 (Current): Updated 2020/mm/dd

Data TypeDownload all or Query/Filter
Images (NIfTI, xx.x GB)

(Requires NBIA Data Retriever.)

Clinical Data (CSV)Link



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