Summary

This page describes The Cancer Genome Archive (TCGA) Breast Phenotype Research Group research project aimed at developing and testing a Breast Imaging-Reporting and Data System (BI-RADS) inspired Breast Feature Key for correlative analysis with the other TCGA data types (genetics, pathology, and clinical).

Reader Progress

Instructions for readers who are actively assigned cases can be found on the TCGA Research on the Cloud wiki page. Instructions for using Clearcanvas to view and score the cases can be found in the How To Guide - Reading Breast Cases with Clearcanvas. Instructions for those who wish to replicate this project independently can be found on the Breast Reader Training page.

Completed - Reader has finished reading the case and submitted their AIM characterizations to the AIM data service.
In Progress - Reader has been instructed to review this case, but has not yet completed it.
Unassigned - Reader has not yet been asked to review this case.

Round 3 - Updated 2/10/14

Group 1 = Liz M, Rita, Basak/Kathy

Group 2 = Jose, Gary, Marie

Group 3 = Liz S, Ermelinda, Beth

Case	Group 1	Group 2	Group 3
TCGA-AO-A03M	In Progress	Unassigned	Unassigned
TCGA-AO-A03V	In Progress	Unassigned	Unassigned
TCGA-AO-A0J8	In Progress	Unassigned	Unassigned
TCGA-AO-A0J9	In Progress	Unassigned	Unassigned
TCGA-AO-A0JB	In Progress	Unassigned	Unassigned
TCGA-AO-A0JF	In Progress	Unassigned	Unassigned
TCGA-AO-A0JI	In Progress	Unassigned	Unassigned
TCGA-AO-A0JM	In Progress	Unassigned	Unassigned
TCGA-AO-A129	unilateral	Unassigned	Unassigned
TCGA-AO-A12D	In Progress	Unassigned	Unassigned
TCGA-AO-A12E	In Progress	Unassigned	Unassigned
TCGA-AO-A12F	In Progress	Unassigned	Unassigned
TCGA-AO-A12G	In Progress	Unassigned	Unassigned
TCGA-AQ-A04H	biopsy	Unassigned	Unassigned
TCGA-AR-A1AN	In Progress	Unassigned	Unassigned
TCGA-AR-A1AQ	In Progress	Unassigned	Unassigned
TCGA-AR-A1AX	In Progress	Unassigned	Unassigned
TCGA-AR-A24M	Post-op	Post-op	Post-op
TCGA-AR-A24R	Probable Hematoma No mass found	Probable Hematoma No mass found	Probable Hematoma No mass found
TCGA-AR-A24S	In Progress	Unassigned	Unassigned
TCGA-AR-A24U	Post-op	Post-op	Post-op
TCGA-AR-A24W	Post-op	Post-op	Post-op
TCGA-AR-A24X	In Progress	Unassigned	Unassigned
TCGA-AR-A254	Post-op	Post-op	Post-op
TCGA-E2-A105	Unilateral	Unilateral	Unilateral
TCGA-E2-A107	Unilateral	Unilateral	Unilateral
TCGA-E2-A108	In Progress	Unassigned	Unassigned
TCGA-E2-A109	In Progress	Unassigned	Unassigned
TCGA-E2-A10F	In Progress	Unassigned	Unassigned
TCGA-E2-A14N	Unilateral No mass found	Unilateral No mass found	Unilateral No mass found
TCGA-E2-A14P	Unassigned	In Progress	Unassigned
TCGA-E2-A14Q	Unilateral No mass found	Unilateral No mass found	Unilateral No mass found
TCGA-E2-A14S	Unassigned	In Progress	Unassigned
TCGA-E2-A14T	Unassigned	In Progress	Unassigned
TCGA-E2-A14V	Unassigned	In Progress	Unassigned
TCGA-E2-A14X	Unassigned	In Progress	Unassigned
TCGA-E2-A14Y	Unassigned	In Progress	Unassigned
TCGA-E2-A150	Unassigned	In Progress	Unassigned
TCGA-E2-A152	Post-op	Post-op	Post-op
TCGA-E2-A159	Unassigned	In Progress	Unassigned
TCGA-E2-A15A	Unassigned	In Progress	Unassigned
TCGA-E2-A15E	Unassigned	In Progress	Unassigned
TCGA-E2-A15F	Unassigned	In Progress	Unassigned
TCGA-E2-A15H	Unassigned	In Progress	Unassigned
TCGA-E2-A15I	Unassigned	In Progress	Unassigned
TCGA-E2-A15J	Unassigned	In Progress	Unassigned
TCGA-E2-A15K	Unassigned	In Progress	Unassigned
TCGA-E2-A15L	Unassigned	In Progress	Unassigned
TCGA-E2-A15M	Unassigned	In Progress	Unassigned
TCGA-E2-A1B1	Unassigned	In Progress	Unassigned
TCGA-E2-A1B5	Unassigned	In Progress	Unassigned
TCGA-E2-A1B6	Unassigned	In Progress	Unassigned
TCGA-E2-A1IE	Unassigned	In Progress	Unassigned
TCGA-E2-A1IG	Unassigned	In Progress	Unassigned
TCGA-E2-A1II	Unassigned	Unassigned	In Progress
TCGA-E2-A1IJ	Unassigned	Unassigned	In Progress
TCGA-E2-A1IK	Unassigned	Unassigned	In Progress
TCGA-E2-A1IN	Unassigned	Unassigned	In Progress
TCGA-E2-A1IP	Unassigned	Unassigned	In Progress
TCGA-E2-A1L7	Unassigned	Unassigned	In Progress
TCGA-E2-A1L9	Unassigned	Unassigned	In Progress
TCGA-E2-A1LG	Unassigned	Unassigned	In Progress
TCGA-EW-A1IZ	Unassigned	Unassigned	In Progress
TCGA-EW-A1J2	Unassigned	Unassigned	MG only, no MR
TCGA-EW-A1J6	Unassigned	Unassigned	In Progress
TCGA-EW-A1OY	Unassigned	Unassigned	In Progress
TCGA-EW-A1OZ	Unassigned	Unassigned	In Progress
TCGA-EW-A1P0	Unassigned	Unassigned	In Progress
TCGA-EW-A1P3	Unassigned	Unassigned	In Progress
TCGA-EW-A1P4	Unassigned	Unassigned	In Progress
TCGA-EW-A1PA	Unassigned	Unassigned	In Progress
TCGA-EW-A1PC	Unassigned	Unassigned	In Progress
TCGA-EW-A2FR	Unassigned	Unassigned	In Progress
TCGA-EW-A2FS	Unassigned	Unassigned	In Progress
TCGA-EW-A3E8	Unassigned	Unassigned	In Progress
TCGA-EW-A423	Unassigned	Unassigned	MG only, no MR

Round 2 - Updated 8/22/13

Group 1 = Liz M, Rita, Basak/Kathy
Group 2 = Jose, Gary, Marie
Group 3 = Liz S, Ermelinda, Beth

Case	Group 1	Group 2	Group 3
TCGA-BH-A0AW	In Progress	Unassigned	Unassigned
TCGA-BH-A0AZ	In Progress	Unassigned	Unassigned
TCGA-BH-A0B1	In Progress	Unassigned	Unassigned
TCGA-BH-A0B3	In Progress	Unassigned	Unassigned
TCGA-BH-A0B5	In Progress	Unassigned	Unassigned
TCGA-BH-A0B6	In Progress	Unassigned	Unassigned
TCGA-BH-A0BG	In Progress	Unassigned	Unassigned
TCGA-BH-A0BJ	In Progress	Unassigned	Unassigned
TCGA-BH-A0BM	In Progress	Unassigned	Unassigned
TCGA-BH-A0BQ	In Progress	Unassigned	Unassigned
TCGA-BH-A0BT	In Progress	Unassigned	Unassigned
TCGA-BH-A0C0	In Progress	Unassigned	Unassigned
TCGA-BH-A0DE	In Progress	Unassigned	Unassigned
TCGA-BH-A0DG	In Progress	Unassigned	Unassigned
TCGA-BH-A0DH	In Progress	Unassigned	Unassigned
TCGA-BH-A0DI	Unassigned	In Progress	Unassigned
TCGA-BH-A0DK	Unassigned	In Progress	Unassigned
TCGA-BH-A0DT	Unassigned	In Progress	Unassigned
TCGA-BH-A0DV	Unassigned	In Progress	Unassigned
TCGA-BH-A0DX	Unassigned	In Progress	Unassigned
TCGA-BH-A0DZ	Unassigned	In Progress	Unassigned
TCGA-BH-A0E0	Unassigned	In Progress	Unassigned
TCGA-BH-A0E1	Unassigned	In Progress	Unassigned
TCGA-BH-A0E2	Unassigned	In Progress	Unassigned
TCGA-BH-A0E9	Unassigned	In Progress	Unassigned
TCGA-BH-A0EI	Unassigned	In Progress	Unassigned
TCGA-BH-A0GY	Unassigned	In Progress	Unassigned
TCGA-BH-A0GZ	Unassigned	In Progress	Unassigned
TCGA-BH-A0H3	Unassigned	In Progress	Unassigned
TCGA-BH-A0H5	Unassigned	In Progress	Unassigned
TCGA-BH-A0H6	Unassigned	Unassigned	In Progress
TCGA-BH-A0H7	Unassigned	Unassigned	In Progress
TCGA-BH-A0H9	Unassigned	Unassigned	In Progress
TCGA-BH-A0HA	Unassigned	Unassigned	In Progress
TCGA-BH-A0HI	Unassigned	Unassigned	In Progress
TCGA-BH-A0HX	Unassigned	Unassigned	In Progress
TCGA-BH-A0HY	Unassigned	Unassigned	In Progress
TCGA-BH-A0RX	Unassigned	Unassigned	In Progress
TCGA-BH-A0W3	Unassigned	Unassigned	In Progress
TCGA-BH-A0W5	Unassigned	Unassigned	In Progress
TCGA-BH-A18F	Unassigned	Unassigned	In Progress
TCGA-BH-A18H	Unassigned	Unassigned	In Progress
TCGA-BH-A18I	Unassigned	Unassigned	In Progress
TCGA-BH-A201	Unassigned	Unassigned	In Progress
TCGA-BH-A202	Unassigned	Unassigned	In Progress
TCGA-BH-A28Q	Unassigned	Unassigned	In Progress

Round 1 - Updated 2/11/13

Batch	Case	Anatomic Site	emorris	zuleymi	gwhitman	ebonaccio	vking	bdogan	mganott	esutton
0	TCGA-AO-A03M	Left Upper Outer Quadrant,Left	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Completed	Completed	Unassigned
0	TCGA-AO-A03V	Left Upper Inner Quadrant,Left	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Completed
0	TCGA-AO-A0J8	Right Upper Outer Quadrant,Right	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Completed	Completed	Unassigned
0	TCGA-AO-A0J9	Right Upper Inner Quadrant, Right Upper Outer Quadrant,Right	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Completed
0	TCGA-AO-A0JB	Left Upper Inner Quadrant, Left Upper Outer Quadrant, Left Lower Outer Quadrant,Left	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Completed	Completed	Unassigned
0	TCGA-AO-A0JF	Left Upper Outer Quadrant,Left	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Completed
0	TCGA-AO-A0JI	Left Upper Outer Quadrant,Left	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Completed
0	TCGA-AO-A0JM	Right Lower Inner Quadrant, Right Lower Outer Quadrant,Right	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Completed
0	TCGA-AO-A129	Left Lower Outer Quadrant,Left	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Only Right Breast images available
0	TCGA-AO-A12D	Left Upper Outer Quadrant,Left	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Completed
0	TCGA-AO-A12E	Right Lower Inner Quadrant, Right Lower Outer Quadrant,Right	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Completed
0	TCGA-AO-A12F	Right Upper Outer Quadrant,Right	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Completed
0	TCGA-AO-A12G	Right Upper Outer Quadrant,Right	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Completed
1	TCGA-AR-A1AN	Right Upper Outer Quadrant	Completed	Unassigned	Completed	Completed	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-AR-A1AQ	Left Upper Inner Quadrant	Completed	Unassigned	Completed	Completed	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-AR-A1AX	Left Upper Inner Quadrant, Left Upper Outer Quadrant	Completed	Unassigned	Completed	Completed	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-AR-A24M	Left Upper Outer Quadrant	Post-op	Unassigned	Post-op	Post-op	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-AR-A24R	Right Upper Inner Quadrant, Right Upper Outer Quadrant	Probable Hematoma No mass found	Unassigned	Probable Hematoma No mass found	Completed	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-AR-A24S	Right Lower Outer Quadrant	Completed	Unassigned	Completed	Completed	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-AR-A24U	Left Upper Outer Quadrant, Left Lower Outer Quadrant	Post-op	Unassigned	Post-op	Completed	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-AR-A24W	Right Lower Inner Quadrant	Post-op	Unassigned	Post-op	Completed	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-AR-A24X	Right Upper Inner Quadrant	Completed	Unassigned	Completed	Completed	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-AR-A254	Left Upper Inner Quadrant, Left Lower Inner Quadrant	Post-op	Unassigned	Post-op	Post-op	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-E2-A105	Left Upper Inner Quadrant	Unilateral	Unassigned	Unilateral	Unilateral	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-E2-A107	Right Upper Inner Quadrant	Unilateral	Unassigned	Unilateral	Unilateral	Unassigned	Unassigned	Unassigned	Unassigned
1	TCGA-E2-A108	Right Upper Outer Quadrant	Completed	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Unassigned	Completed
2	TCGA-E2-A109	Right Upper Outer Quadrant	Unassigned	Completed	Unassigned	Unassigned	Completed	Completed	Unassigned	Unassigned
2	TCGA-E2-A10F	Left Upper Outer Quadrant	Unassigned	Completed	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed
2	TCGA-E2-A14N	Right Upper Inner Quadrant	Unassigned	Completed	Unassigned	Unassigned	Unilateral No mass found	Unassigned	Unassigned	Unilateral No mass found
2	TCGA-E2-A14P	Right Upper Outer Quadrant	Unassigned	Completed	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed
2	TCGA-E2-A14Q	Left Upper Outer Quadrant	Unassigned	Post-op	Unassigned	Unassigned	Unilateral No mass found	Unassigned	Unassigned	Unilateral No mass found
2	TCGA-E2-A14S	Left Lower Outer Quadrant	Unassigned	Completed	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed
2	TCGA-E2-A14T	Left Upper Inner Quadrant	Unassigned	Completed	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed
2	TCGA-E2-A14V	Left Lower Inner Quadrant	Unassigned	Completed	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed
2	TCGA-E2-A14X	Right Upper Outer Quadrant	Unassigned	Completed	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed
2	TCGA-E2-A14Y	Right	Unassigned	Completed	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed
3	TCGA-E2-A150	Left Upper Outer Quadrant	Completed	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Completed	Unassigned
3	TCGA-E2-A152	Left Upper Inner Quadrant	Post-op	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Completed	Unassigned
3	TCGA-E2-A159	Left Lower Outer Quadrant	Completed	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Completed	Unassigned
3	TCGA-E2-A15A	Left	Completed	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Completed	Unassigned
3	TCGA-E2-A15E	Left	Completed	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Completed	Unassigned
3	TCGA-E2-A15F	Left Upper Outer Quadrant	Completed	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Completed	Unassigned
3	TCGA-E2-A15H	Right Upper Outer Quadrant	Completed	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Completed	Unassigned
3	TCGA-E2-A15I	Left Upper Outer Quadrant, Left Lower Outer Quadrant	Completed	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Completed	Unassigned
3	TCGA-E2-A15J	Left Upper Outer Quadrant	Completed	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Completed	Unassigned
3	TCGA-E2-A15K	Right Upper Outer Quadrant	Completed	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Completed	Unassigned
4	TCGA-E2-A15L	Right	Unassigned	Unassigned	Completed	Completed	Completed	Unassigned	Unassigned	Unassigned
4	TCGA-E2-A15M	Right Lower Outer Quadrant	Unassigned	Unassigned	Completed	Completed	Completed	Unassigned	Unassigned	Unassigned
4	TCGA-E2-A1B1	Left Upper Outer Quadrant	Unassigned	Unassigned	Completed	Completed	Completed	Unassigned	Unassigned	Unassigned
4	TCGA-E2-A1B5	Left	Unassigned	Unassigned	Completed	Completed	Completed	Unassigned	Unassigned	Unassigned
4	TCGA-E2-A1B6	Left	Unassigned	Unassigned	Completed	Completed	Completed	Unassigned	Unassigned	Unassigned
4	TCGA-E2-A1IE	Right	Unassigned	Unassigned	Completed	Completed	Completed	Unassigned	Unassigned	Unassigned
4	TCGA-E2-A1IG	Right Upper Inner Quadrant	Unassigned	Unassigned	Completed	Completed	Completed	Unassigned	Unassigned	Unassigned
4	TCGA-E2-A1II	Left	Unassigned	Unassigned	Completed	Completed	Completed	Unassigned	Unassigned	Unassigned
4	TCGA-E2-A1IJ	Right Upper Outer Quadrant	Unassigned	Unassigned	Completed	Completed	Completed	Unassigned	Unassigned	Unassigned
4	TCGA-E2-A1IK	Left	Unassigned	Unassigned	Completed	Completed	Completed	Unassigned	Unassigned	Unassigned
5	TCGA-E2-A1IN	Right	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed
5	TCGA-E2-A1IP	Left Upper Outer Quadrant	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed
5	TCGA-E2-A1L7	Right Upper Outer Quadrant	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed
5	TCGA-E2-A1L9	Right	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed
5	TCGA-E2-A1LG	Left Upper Outer Quadrant	Unassigned	Unassigned	Unassigned	Unassigned	Completed	Unassigned	Unassigned	Completed

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Name	User name	Role In Clinical Trial	Number within role in clinical trial
Elizabeth Morris	emorris	Performing	1
Margarita Zuley	mzuley	Performing	2
Gary Whitman	gwhitman	Performing	3
Ermelinda Bonaccio	ebonaccio	Performing	4
Valencia King	vking	Performing	5
Basak Dogan	bdogan	Performing	6
Marie Ganott	mganott	Performing	7
Elizabeth Sutton	esutton	Performing	8
Jose Net	jnet	Performing	9
Elizabeth Burnside	eburnside	Performing	10
Kathy Brandt	kbrandt	Performing	11

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Summary

Reader Progress

Round 3 - Updated 2/10/14

Round 2 - Updated 8/22/13

Round 1 - Updated 2/11/13

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Breast Image Feature Scoring Project

Summary

Reader Progress

Round 3 - Updated 2/10/14

Round 2 - Updated 8/22/13

Round 1 - Updated 2/11/13

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