Summary
This page describes the steps utilized by the TCGA The Cancer Genome Archive (TCGA) Breast Phenotype Research Group to develop and test their image features research project aimed at developing and testing a Breast Imaging-Reporting and Data System (BI-RADS) inspired Breast Feature Key for correlative analysis with the other TCGA data types (genetics, pathology, and clinical).
Reader Progress
This is the latest progress on the TCGA-BRCA casesInstructions for readers who are actively assigned cases can be found on the TCGA Research on the Cloud wiki page. Instructions for using the data and setting up the software are here: Using your Amazon Cloud Computer for TCGA Research (wiki version).docClearcanvas to view and score the cases can be found in the How To Guide - Reading Breast Cases with Clearcanvas. Instructions for those who wish to replicate this project independently can be found on the Breast Reader Training page.
Completed - Reader has finished reading the case and submitted their AIM characterizations to the AIM data service.
In Progress - Reader has been instructed to review this case, but has not yet completed it.
Unassigned - Reader has not yet been asked to review this case.
Round
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3 - Updated 2/10/14
Group 1 = Liz M, Rita, Basak/Kathy
Group 2 = Jose, Gary, Marie
Group 3 = Liz S, Ermelinda, Beth
Advanced Tables - Table Plus |
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sortColumn | 1 |
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autoNumber | true |
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Case | Group 1
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| Group 3
| TCGA-AO-A03M | In Progress | Unassigned | Unassigned | TCGA-AO-A03V | In Progress | Unassigned | Unassigned | TCGA-AO-A0J8 | In Progress | Unassigned | Unassigned | TCGA-AO-A0J9 | In Progress | Unassigned | Unassigned | TCGA-AO-A0JB | In Progress | Unassigned | Unassigned | TCGA-AO-A0JF | In Progress | Unassigned | Unassigned | TCGA-AO-A0JI | In Progress | Unassigned | Unassigned | TCGA-AO-A0JM | In Progress | Unassigned | Unassigned | TCGA-AO-A129 | unilateral | Unassigned | Unassigned | TCGA-AO-A12D | In Progress | Unassigned | Unassigned | TCGA-AO-A12E | In Progress | Unassigned | Unassigned | TCGA-AO-A12F | In Progress | Unassigned | Unassigned | TCGA-AO-A12G | In Progress | Unassigned | Unassigned | TCGA-AQ-A04H | biopsy | Unassigned | Unassigned | TCGA-AR-A1AN | In Progress | Unassigned | Unassigned | TCGA-AR-A1AQ | In Progress | Unassigned | Unassigned | TCGA-AR-A1AX | In Progress | Unassigned | Unassigned | TCGA-AR-A24M | Post-op | Post-op | Post-op | TCGA-AR-A24R | Probable Hematoma No mass found | Probable Hematoma No mass found | Probable Hematoma No mass found | TCGA-AR-A24S | In Progress | Unassigned | Unassigned | TCGA-AR-A24U | Post-op | Post-op | Post-op | TCGA-AR-A24W | Post-op | Post-op | Post-op | TCGA-AR-A24X | In Progress | Unassigned | Unassigned | TCGA-AR-A254 | Post-op | Post-op | Post-op | TCGA-E2-A105 | Unilateral | Unilateral | Unilateral | TCGA-E2-A107 | Unilateral | Unilateral | Unilateral | TCGA-E2-A108 | In Progress | Unassigned | Unassigned | TCGA-E2-A109 | In Progress | Unassigned | Unassigned | TCGA-E2-A10F | In Progress | Unassigned | Unassigned | TCGA-E2-A14N | Unilateral No mass found | Unilateral No mass found | Unilateral No mass found | TCGA-E2-A14P | Unassigned | In Progress | Unassigned | TCGA-E2-A14Q | Â Unilateral No mass found | Unilateral No mass found | Unilateral No mass found | TCGA-E2-A14S | Unassigned | In Progress | Unassigned | TCGA-E2-A14T | Unassigned | In Progress | Unassigned | TCGA-E2-A14V | Unassigned | In Progress | Unassigned | TCGA-E2-A14X | Unassigned | In Progress | Unassigned | TCGA-E2-A14Y | Unassigned | In Progress | Unassigned | TCGA-E2-A150 | Unassigned | In Progress | Unassigned | TCGA-E2-A152 | Post-op | Post-op | Post-op | TCGA-E2-A159 | Unassigned | In Progress | Unassigned | TCGA-E2-A15A | Unassigned | In Progress | Unassigned | TCGA-E2-A15E | Unassigned | In Progress | Unassigned | TCGA-E2-A15F | Unassigned | In Progress | Unassigned | TCGA-E2-A15H | Unassigned | In Progress | Unassigned | TCGA-E2-A15I | Unassigned | In Progress | Unassigned | TCGA-E2-A15J | Unassigned | In Progress | Unassigned | TCGA-E2-A15K | Unassigned | In Progress | Unassigned | TCGA-E2-A15L | Unassigned | In Progress | Unassigned | TCGA-E2-A15M | Unassigned | In Progress | Unassigned | TCGA-E2-A1B1 | Unassigned | In Progress | Unassigned | TCGA-E2-A1B5 | Unassigned | In Progress | Unassigned | TCGA-E2-A1B6 | Unassigned | In Progress | Unassigned | TCGA-E2-A1IE | Unassigned | In Progress | Unassigned | TCGA-E2-A1IG | Unassigned | In Progress | Unassigned | TCGA-E2-A1II | Unassigned | Unassigned | In Progress | TCGA-E2-A1IJ | Unassigned | Unassigned | In Progress | TCGA-E2-A1IK | Unassigned | Unassigned | In Progress | TCGA-E2-A1IN | Unassigned | Unassigned | In Progress | TCGA-E2-A1IP | Unassigned | Unassigned | In Progress | TCGA-E2-A1L7 | Unassigned | Unassigned | In Progress | TCGA-E2-A1L9 | Unassigned | Unassigned | In Progress | TCGA-E2-A1LG | Unassigned | Unassigned | In Progress | TCGA-EW-A1IZ | Unassigned | Unassigned | In Progress | TCGA-EW-A1J2 | Unassigned | Unassigned | MG only, no MR | TCGA-EW-A1J6 | Unassigned | Unassigned | In Progress | TCGA-EW-A1OY | Unassigned | Unassigned | In Progress | TCGA-EW-A1OZ | Unassigned | Unassigned | In Progress | TCGA-EW-A1P0 | Unassigned | Unassigned | In Progress | TCGA-EW-A1P3 | Unassigned | Unassigned | In Progress | TCGA-EW-A1P4 | Unassigned | Unassigned | In Progress | TCGA-EW-A1PA | Unassigned | Unassigned | In Progress | TCGA-EW-A1PC | Unassigned | Unassigned | In Progress | TCGA-EW-A2FR | Unassigned | Unassigned | In Progress | TCGA-EW-A2FS | Unassigned | Unassigned | In Progress | TCGA-EW-A3E8 | Unassigned | Unassigned | In Progress | TCGA-EW-A423 | Unassigned | Unassigned | MG only, no MR |
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Round 2 - Updated 8/22/13
Advanced Tables - Table Plus |
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sortColumn | 1 |
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autoNumber | true |
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Group 1 = Liz M, Rita, Basak/Kathy Group 2 = Jose, Gary, Marie Group 3 = Liz S, Ermelinda, Beth Case | Group 1 | Group 2 | Group 3 |
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TCGA-BH-A0AW | In Progress | Unassigned | Unassigned | TCGA-BH-A0AZ | In Progress | Unassigned | Unassigned | TCGA-BH-A0B1 | In Progress | Unassigned | Unassigned | TCGA-BH-A0B3 | In Progress | Unassigned | Unassigned | TCGA-BH-A0B5 | In Progress | Unassigned | Unassigned | TCGA-BH-A0B6 | In Progress | Unassigned | Unassigned | TCGA-BH-A0BG | In Progress | Unassigned | Unassigned | TCGA-BH-A0BJ | In Progress | Unassigned | Unassigned | TCGA-BH-A0BM | In Progress | Unassigned | Unassigned | TCGA-BH-A0BQ | In Progress | Unassigned | Unassigned | TCGA-BH-A0BT | In Progress | Unassigned | Unassigned | TCGA-BH-A0C0 | In Progress | Unassigned | Unassigned | TCGA-BH-A0DE | In Progress | Unassigned | Unassigned | TCGA-BH-A0DG | In Progress | Unassigned | Unassigned | TCGA-BH-A0DH | In Progress | Unassigned | Unassigned | TCGA-BH-A0DI | Unassigned | In Progress | Unassigned | TCGA-BH-A0DK | Unassigned | In Progress | Unassigned | TCGA-BH-A0DT | Unassigned | In Progress | Unassigned | TCGA-BH-A0DV | Unassigned | In Progress | Unassigned | TCGA-BH-A0DX | Unassigned | In Progress | Unassigned | TCGA-BH-A0DZ | Unassigned | In Progress | Unassigned | TCGA-BH-A0E0 | Unassigned | In Progress | Unassigned | TCGA-BH-A0E1 | Unassigned | In Progress | Unassigned | TCGA-BH-A0E2 | Unassigned | In Progress | Unassigned | TCGA-BH-A0E9 | Unassigned | In Progress | Unassigned | TCGA-BH-A0EI | Unassigned | In Progress | Unassigned | TCGA-BH-A0GY | Unassigned | In Progress | Unassigned | TCGA-BH-A0GZ | Unassigned | In Progress | Unassigned | TCGA-BH-A0H3 | Unassigned | In Progress | Unassigned | TCGA-BH-A0H5 | Unassigned | In Progress | Unassigned | TCGA-BH-A0H6 | Unassigned | Unassigned | In Progress | TCGA-BH-A0H7 | Unassigned | Unassigned | In Progress | TCGA-BH-A0H9 | Unassigned | Unassigned | In Progress | TCGA-BH-A0HA | Unassigned | Unassigned | In Progress | TCGA-BH-A0HI | Unassigned | Unassigned | In Progress | TCGA-BH-A0HX | Unassigned | Unassigned | In Progress | TCGA-BH-A0HY | Unassigned | Unassigned | In Progress | TCGA-BH-A0RX | Unassigned | Unassigned | In Progress | TCGA-BH-A0W3 | Unassigned | Unassigned | In Progress | TCGA-BH-A0W5 | Unassigned | Unassigned | In Progress | TCGA-BH-A18F | Unassigned | Unassigned | In Progress | TCGA-BH-A18H | Unassigned | Unassigned | In Progress | TCGA-BH-A18I | Unassigned | Unassigned | In Progress | TCGA-BH-A201 | Unassigned | Unassigned | In Progress | TCGA-BH-A202 | Unassigned | Unassigned | In Progress | TCGA-BH-A28Q | Unassigned | Unassigned | In Progress |
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Round 1 - Updated 2/11/13
Advanced Tables - Table Plus |
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Batch | Case | Anatomic Site | emorris | zuleymi | gwhitman | ebonaccio | vking | bdogan | mganott | esutton | 0 | TCGA-AO-A03M | Left Upper Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Completed | Completed | Unassigned | 0 | TCGA-AO-A03V | Left Upper Inner Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A0J8 | Right Upper Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Completed | Completed | Unassigned | 0 | TCGA-AO-A0J9 | Right Upper Inner Quadrant, Right Upper Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A0JB | Left Upper Inner Quadrant, Left Upper Outer Quadrant, Left Lower Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Completed | Completed | Unassigned | 0 | TCGA-AO-A0JF | Left Upper Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A0JI | Left Upper Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A0JM | Right Lower Inner Quadrant, Right Lower Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A129 | Left Lower Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Only Right Breast images available | 0 | TCGA-AO-A12D | Left Upper Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A12E | Right Lower Inner Quadrant, Right Lower Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A12F | Right Upper Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A12G | Right Upper Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 1 | TCGA-AR-A1AN | Right Upper Outer Quadrant | Completed | Unassigned | Completed | Completed | Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A1AQ | Left Upper Inner Quadrant | Completed | Unassigned | Completed | Completed | Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A1AX | Left Upper Inner Quadrant, Left Upper Outer Quadrant | Completed | Unassigned | Completed | Completed | Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24M | Left Upper Outer Quadrant |
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In Progress
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24R | Right Upper Inner Quadrant, Right Upper Outer Quadrant |
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| Probable Hematoma No mass found |
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Probable Hematoma No mass found | Completed | Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24S | Right Lower Outer Quadrant |
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In Progress
Completed | Completed | Unassigned |
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24U | Left Upper Outer Quadrant, Left Lower Outer Quadrant |
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In Progress
| Post-op | Completed | Unassigned |
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24W | Right Lower Inner Quadrant |
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In Progress
| Post-op | Completed | Unassigned |
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24X | Right Upper Inner Quadrant |
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Completed | Unassigned | Completed |
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Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A254 | Left Upper Inner Quadrant, Left Lower Inner Quadrant |
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In Progress
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-E2-A105 | Left Upper Inner Quadrant |
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Unilateral | Unassigned | Unilateral |
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Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-E2-A107 | Right Upper Inner Quadrant |
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In Progress
Unilateral | Unilateral | Unassigned |
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-E2-A108 | Right Upper Outer Quadrant |
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Completed | Unassigned | Unassigned | Unassigned | Completed | 2 | TCGA-E2-A109 | Right Upper Outer Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | 2 | TCGA-E2-A10F | Left Upper Outer Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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No mass
No nonmass (if applicable)
Unassigned | Unassigned | Completed |
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| 2 | TCGA-E2-A14N | Right Upper Inner Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Unilateral No mass found |
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| Unassigned | Unassigned | Unilateral No mass |
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Unassigned
found | 2 | TCGA-E2-A14P | Right Upper Outer Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Mass missing markup
No nonmass (if applicable)
Unassigned | Unassigned | Completed |
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| 2 | TCGA-E2-A14Q | Left Upper Outer Quadrant | Unassigned |
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Post-op | Unassigned | Unassigned | Unilateral No mass found | Unassigned | Unassigned | Unilateral No mass |
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found | 2 | TCGA-E2-A14S | Left Lower Outer Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 2 | TCGA-E2-A14T | Left Upper Inner Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 2 | TCGA-E2-A14V | Left Lower Inner Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 2 | TCGA-E2-A14X | Right Upper Outer Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 2 | TCGA-E2-A14Y | Right | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 3 | TCGA-E2-A150 | Left Upper Outer Quadrant |
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Completed | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A152 | Left Upper Inner Quadrant |
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Post-op | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A159 | Left Lower Outer Quadrant |
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Completed | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A15A | Left |
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Completed | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A15E | Left |
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Completed | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A15F | Left Upper Outer Quadrant |
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Completed | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A15H | Right Upper Outer Quadrant | Completed | Unassigned | Unassigned | Unassigned | Completed | Unassigned |
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| 3 | TCGA-E2-A15I | Left Upper Outer Quadrant, Left Lower Outer Quadrant | Completed | Unassigned | Unassigned | Unassigned | Completed | Unassigned |
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| 3 | TCGA-E2-A15J | Left Upper Outer Quadrant | Completed | Unassigned | Unassigned | Unassigned | Completed | Unassigned |
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| 3 | TCGA-E2-A15K | Right Upper Outer Quadrant | Completed | Unassigned | Unassigned | Unassigned | Completed | Unassigned |
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| 4 | TCGA-E2-A15L | Right | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A15M | Right Lower Outer Quadrant | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1B1 | Left Upper Outer Quadrant | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1B5 | Left | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1B6 | Left | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1IE | Right | Unassigned | Unassigned |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1IG | Right Upper Inner Quadrant | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1II | Left | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1IJ | Right Upper Outer Quadrant | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1IK | Left | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 5 | TCGA-E2-A1IN | Right | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Unassigned | Unassigned |
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Completed | 5 | TCGA-E2-A1IP | Left Upper Outer Quadrant | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Unassigned | Unassigned |
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Completed | 5 | TCGA-E2-A1L7 | Right Upper Outer Quadrant | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Unassigned | Unassigned |
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Completed | 5 | TCGA-E2-A1L9 | Right | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Unassigned | Unassigned |
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Completed | 5 | TCGA-E2-A1LG | Left Upper Outer Quadrant | Unassigned | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Unassigned |
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TCGA-AR-A1AN
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Right Upper Outer Quadrant
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Completed
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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5
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TCGA-AR-A1AQ
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Left Upper Inner Quadrant
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Completed
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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5
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TCGA-AR-A1AX
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Left Upper Inner Quadrant,
Left Upper Outer Quadrant
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
ClearCanvas sign-on
Name | User name | Role In Clinical Trial | Number within role in clinical trial |
Elizabeth Morris | emorris | Performing | 1 |
Margarita Zuley | mzuley | Performing | 2 |
Gary Whitman | gwhitman | Performing | 3 |
Ermelinda Bonaccio | ebonaccio | Performing | 4 |
Valencia King | vking | Performing | 5 |
Basak Dogan | bdogan | Performing | 6 |
Marie Ganott | mganott | Performing | 7 |
Elizabeth Sutton | esutton | Performing | 8 |
Jose Net | jnet | Performing | 9 |
Elizabeth Burnside | eburnside | Performing | 10 |
Kathy Brandt | kbrandt | Performing | 11 |
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