Summary
This page describes the The Cancer Genome Archive (TCGA) Breast Phenotype Research Group research project aimed at developing and testing a BIRADS inspired Breast Imaging-Reporting and Data System (BI-RADS) inspired Breast Feature Key for correlative analysis with the other TCGA data types (genetics, pathology, and clinical). Â
Reader Progress
This is the latest progress on the TCGA-BRCA cases. Instructions for readers who are being actively assigned cases can be found on the TCGA Research on the Cloud wiki page. . Instructions for using Clearcanvas to view and score the cases can be found in the How To Guide - Reading Breast Cases with Clearcanvas. Instructions for those who wish to replicate this project independently can be found on the Breast Reader Training page.
Completed - Reader has finished reading the case and submitted their AIM characterizations to the AIM data service.
In Progress - Reader has been instructed to review this case, but has not yet completed it.
Unassigned - Reader has not yet been asked to review this case.
Round 3 - Updated 2/10/14
Group 1 = Liz M, Rita, Basak/Kathy
Group 2 = Jose, Gary, Marie
Group 3 = Liz S, Ermelinda, Beth
Advanced Tables - Table Plus |
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autoNumber | true |
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Case | Group 1
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| Group 3
| TCGA-AO-A03M | In Progress | Unassigned | Unassigned | TCGA-AO-A03V | In Progress | Unassigned | Unassigned | TCGA-AO-A0J8 | In Progress | Unassigned | Unassigned | TCGA-AO-A0J9 | In Progress | Unassigned | Unassigned | TCGA-AO-A0JB | In Progress | Unassigned | Unassigned | TCGA-AO-A0JF | In Progress | Unassigned | Unassigned | TCGA-AO-A0JI | In Progress | Unassigned | Unassigned | TCGA-AO-A0JM | In Progress | Unassigned | Unassigned | TCGA-AO-A129 | unilateral | Unassigned | Unassigned | TCGA-AO-A12D | In Progress | Unassigned | Unassigned | TCGA-AO-A12E | In Progress | Unassigned | Unassigned | TCGA-AO-A12F | In Progress | Unassigned | Unassigned | TCGA-AO-A12G | In Progress | Unassigned | Unassigned | TCGA-AQ-A04H | biopsy | Unassigned | Unassigned | TCGA-AR-A1AN | In Progress | Unassigned | Unassigned | TCGA-AR-A1AQ | In Progress | Unassigned | Unassigned | TCGA-AR-A1AX | In Progress | Unassigned | Unassigned | TCGA-AR-A24M | Post-op | Post-op | Post-op | TCGA-AR-A24R | Probable Hematoma No mass found | Probable Hematoma No mass found | Probable Hematoma No mass found | TCGA-AR-A24S | In Progress | Unassigned | Unassigned | TCGA-AR-A24U | Post-op | Post-op | Post-op | TCGA-AR-A24W | Post-op | Post-op | Post-op | TCGA-AR-A24X | In Progress | Unassigned | Unassigned | TCGA-AR-A254 | Post-op | Post-op | Post-op | TCGA-E2-A105 | Unilateral | Unilateral | Unilateral | TCGA-E2-A107 | Unilateral | Unilateral | Unilateral | TCGA-E2-A108 | In Progress | Unassigned | Unassigned | TCGA-E2-A109 | In Progress | Unassigned | Unassigned | TCGA-E2-A10F | In Progress | Unassigned | Unassigned | TCGA-E2-A14N | Unilateral No mass found | Unilateral No mass found | Unilateral No mass found | TCGA-E2-A14P | Unassigned | In Progress | Unassigned | TCGA-E2-A14Q | Â Unilateral No mass found | Unilateral No mass found | Unilateral No mass found | TCGA-E2-A14S | Unassigned | In Progress | Unassigned | TCGA-E2-A14T | Unassigned | In Progress | Unassigned | TCGA-E2-A14V | Unassigned | In Progress | Unassigned | TCGA-E2-A14X | Unassigned | In Progress | Unassigned | TCGA-E2-A14Y | Unassigned | In Progress | Unassigned | TCGA-E2-A150 | Unassigned | In Progress | Unassigned | TCGA-E2-A152 | Post-op | Post-op | Post-op | TCGA-E2-A159 | Unassigned | In Progress | Unassigned | TCGA-E2-A15A | Unassigned | In Progress | Unassigned | TCGA-E2-A15E | Unassigned | In Progress | Unassigned | TCGA-E2-A15F | Unassigned | In Progress | Unassigned | TCGA-E2-A15H | Unassigned | In Progress | Unassigned | TCGA-E2-A15I | Unassigned | In Progress | Unassigned | TCGA-E2-A15J | Unassigned | In Progress | Unassigned | TCGA-E2-A15K | Unassigned | In Progress | Unassigned | TCGA-E2-A15L | Unassigned | In Progress | Unassigned | TCGA-E2-A15M | Unassigned | In Progress | Unassigned | TCGA-E2-A1B1 | Unassigned | In Progress | Unassigned | TCGA-E2-A1B5 | Unassigned | In Progress | Unassigned | TCGA-E2-A1B6 | Unassigned | In Progress | Unassigned | TCGA-E2-A1IE | Unassigned | In Progress | Unassigned | TCGA-E2-A1IG | Unassigned | In Progress | Unassigned | TCGA-E2-A1II | Unassigned | Unassigned | In Progress | TCGA-E2-A1IJ | Unassigned | Unassigned | In Progress | TCGA-E2-A1IK | Unassigned | Unassigned | In Progress | TCGA-E2-A1IN | Unassigned | Unassigned | In Progress | TCGA-E2-A1IP | Unassigned | Unassigned | In Progress | TCGA-E2-A1L7 | Unassigned | Unassigned | In Progress | TCGA-E2-A1L9 | Unassigned | Unassigned | In Progress | TCGA-E2-A1LG | Unassigned | Unassigned | In Progress | TCGA-EW-A1IZ | Unassigned | Unassigned | In Progress | TCGA-EW-A1J2 | Unassigned | Unassigned | MG only, no MR | TCGA-EW-A1J6 | Unassigned | Unassigned | In Progress | TCGA-EW-A1OY | Unassigned | Unassigned | In Progress | TCGA-EW-A1OZ | Unassigned | Unassigned | In Progress | TCGA-EW-A1P0 | Unassigned | Unassigned | In Progress | TCGA-EW-A1P3 | Unassigned | Unassigned | In Progress | TCGA-EW-A1P4 | Unassigned | Unassigned | In Progress | TCGA-EW-A1PA | Unassigned | Unassigned | In Progress | TCGA-EW-A1PC | Unassigned | Unassigned | In Progress | TCGA-EW-A2FR | Unassigned | Unassigned | In Progress | TCGA-EW-A2FS | Unassigned | Unassigned | In Progress | TCGA-EW-A3E8 | Unassigned | Unassigned | In Progress | TCGA-EW-A423 | Unassigned | Unassigned | MG only, no MR |
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Round 2 - Updated 8/22/13
Advanced Tables - Table Plus |
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sortColumn | 1 |
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autoNumber | true |
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Group 1 = Liz M, Rita, Basak/Kathy Group 2 = Jose, Gary, Marie Group 3 = Liz S, Ermelinda, Beth Case | Group 1 | Group 2 | Group 3 |
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TCGA-BH-A0AW | In Progress | Unassigned | Unassigned | TCGA-BH-A0AZ | In Progress | Unassigned | Unassigned | TCGA-BH-A0B1 | In Progress | Unassigned | Unassigned | TCGA-BH-A0B3 | In Progress | Unassigned | Unassigned | TCGA-BH-A0B5 | In Progress | Unassigned | Unassigned | TCGA-BH-A0B6 | In Progress | Unassigned | Unassigned | TCGA-BH-A0BG | In Progress | Unassigned | Unassigned | TCGA-BH-A0BJ | In Progress | Unassigned | Unassigned | TCGA-BH-A0BM | In Progress | Unassigned | Unassigned | TCGA-BH-A0BQ | In Progress | Unassigned | Unassigned | TCGA-BH-A0BT | In Progress | Unassigned | Unassigned | TCGA-BH-A0C0 | In Progress | Unassigned | Unassigned | TCGA-BH-A0DE | In Progress | Unassigned | Unassigned | TCGA-BH-A0DG | In Progress | Unassigned | Unassigned | TCGA-BH-A0DH | In Progress | Unassigned | Unassigned | TCGA-BH-A0DI | Unassigned | In Progress | Unassigned | TCGA-BH-A0DK | Unassigned | In Progress | Unassigned | TCGA-BH-A0DT | Unassigned | In Progress | Unassigned | TCGA-BH-A0DV | Unassigned | In Progress | Unassigned | TCGA-BH-A0DX | Unassigned | In Progress | Unassigned | TCGA-BH-A0DZ | Unassigned | In Progress | Unassigned | TCGA-BH-A0E0 | Unassigned | In Progress | Unassigned | TCGA-BH-A0E1 | Unassigned | In Progress | Unassigned | TCGA-BH-A0E2 | Unassigned | In Progress | Unassigned | TCGA-BH-A0E9 | Unassigned | In Progress | Unassigned | TCGA-BH-A0EI | Unassigned | In Progress | Unassigned | TCGA-BH-A0GY | Unassigned | In Progress | Unassigned | TCGA-BH-A0GZ | Unassigned | In Progress | Unassigned | TCGA-BH-A0H3 | Unassigned | In Progress | Unassigned | TCGA-BH-A0H5 | Unassigned | In Progress | Unassigned | TCGA-BH-A0H6 | Unassigned | Unassigned | In Progress | TCGA-BH-A0H7 | Unassigned | Unassigned | In Progress | TCGA-BH-A0H9 | Unassigned | Unassigned | In Progress | TCGA-BH-A0HA | Unassigned | Unassigned | In Progress | TCGA-BH-A0HI | Unassigned | Unassigned | In Progress | TCGA-BH-A0HX | Unassigned | Unassigned | In Progress | TCGA-BH-A0HY | Unassigned | Unassigned | In Progress | TCGA-BH-A0RX | Unassigned | Unassigned | In Progress | TCGA-BH-A0W3 | Unassigned | Unassigned | In Progress | TCGA-BH-A0W5 | Unassigned | Unassigned | In Progress | TCGA-BH-A18F | Unassigned | Unassigned | In Progress | TCGA-BH-A18H | Unassigned | Unassigned | In Progress | TCGA-BH-A18I | Unassigned | Unassigned | In Progress | TCGA-BH-A201 | Unassigned | Unassigned | In Progress | TCGA-BH-A202 | Unassigned | Unassigned | In Progress | TCGA-BH-A28Q | Unassigned | Unassigned | In Progress |
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Round 1 - Updated
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2/
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11/
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13
Advanced Tables - Table Plus |
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Batch | Case | Anatomic Site | emorris | zuleymi | gwhitman | ebonaccio | vking | bdogan | mganott | esutton | 0 | TCGA-AO-A03M | Left Upper Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Completed | Completed | Unassigned | 0 | TCGA-AO-A03V | Left Upper Inner Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A0J8 | Right Upper Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Completed | Completed | Unassigned | 0 | TCGA-AO-A0J9 | Right Upper Inner Quadrant, Right Upper Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A0JB | Left Upper Inner Quadrant, Left Upper Outer Quadrant, Left Lower Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Completed | Completed | Unassigned | 0 | TCGA-AO-A0JF | Left Upper Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A0JI | Left Upper Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A0JM | Right Lower Inner Quadrant, Right Lower Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A129 | Left Lower Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Only Right Breast images available | 0 | TCGA-AO-A12D | Left Upper Outer Quadrant,Left | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A12E | Right Lower Inner Quadrant, Right Lower Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A12F | Right Upper Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 0 | TCGA-AO-A12G | Right Upper Outer Quadrant,Right | Unassigned | Completed | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Completed | 1 | TCGA-AR-A1AN | Right Upper Outer Quadrant | Completed | Unassigned | Completed | Completed | Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A1AQ | Left Upper Inner Quadrant | Completed | Unassigned | Completed | Completed | Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A1AX | Left Upper Inner Quadrant, Left Upper Outer Quadrant | Completed | Unassigned | Completed | Completed | Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24M | Left Upper Outer Quadrant |
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In Progress
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24R | Right Upper Inner Quadrant, Right Upper Outer Quadrant |
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| Probable Hematoma No mass found |
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Probable Hematoma No mass found | Completed | Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24S | Right Lower Outer Quadrant |
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In Progress
Completed | Completed | Unassigned |
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24U | Left Upper Outer Quadrant, Left Lower Outer Quadrant |
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In Progress
| Post-op | Completed | Unassigned |
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24W | Right Lower Inner Quadrant |
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In Progress
Post-op | Completed | Unassigned |
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A24X | Right Upper Inner Quadrant |
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Completed | Completed | Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-AR-A254 | Left Upper Inner Quadrant, Left Lower Inner Quadrant |
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In Progress
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-E2-A105 | Left Upper Inner Quadrant |
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Unilateral | Unassigned | Unilateral |
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Unassigned | Unassigned | Unassigned | Unassigned | 1 | TCGA-E2-A107 | Right Upper Inner Quadrant |
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In Progress
Unilateral | Unilateral | Unassigned |
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| Unassigned | Unassigned | Unassigned | 1 | TCGA-E2-A108 | Right Upper Outer Quadrant |
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Completed | Unassigned | Unassigned | Unassigned | Completed | 2 | TCGA-E2-A109 | Right Upper Outer Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed | Completed | Unassigned | Unassigned | 2 | TCGA-E2-A10F | Left Upper Outer Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 2 | TCGA-E2-A14N | Right Upper Inner Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Unilateral No mass found |
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Unassigned | Unassigned | Unilateral No mass found | 2 | TCGA-E2-A14P | Right Upper Outer Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 2 | TCGA-E2-A14Q | Left Upper Outer Quadrant | Unassigned |
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Post-op | Unassigned | Unassigned | Unilateral No mass found |
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Unassigned | Unassigned | Unilateral No mass found | 2 | TCGA-E2-A14S | Left Lower Outer Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 2 | TCGA-E2-A14T | Left Upper Inner Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 2 | TCGA-E2-A14V | Left Lower Inner Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 2 | TCGA-E2-A14X | Right Upper Outer Quadrant | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 2 | TCGA-E2-A14Y | Right | Unassigned |
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Completed | Unassigned | Unassigned | Completed |
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Unassigned | Unassigned | Completed | 3 | TCGA-E2-A150 | Left Upper Outer Quadrant |
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Completed | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A152 | Left Upper Inner Quadrant |
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Post-op | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A159 | Left Lower Outer Quadrant |
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Completed | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A15A | Left |
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Completed | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A15E | Left |
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Completed | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A15F | Left Upper Outer Quadrant |
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Completed | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Completed | Unassigned | 3 | TCGA-E2-A15H | Right Upper Outer Quadrant | Completed | Unassigned | Unassigned | Unassigned | Completed | Unassigned |
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In Progress
3 | TCGA-E2-A15I | Left Upper Outer Quadrant, Left Lower Outer Quadrant | Completed | Unassigned | Unassigned | Unassigned | Completed | Unassigned |
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| 3 | TCGA-E2-A15J | Left Upper Outer Quadrant | Completed | Unassigned | Unassigned | Unassigned | Completed | Unassigned |
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In Progress
3 | TCGA-E2-A15K | Right Upper Outer Quadrant | Completed | Unassigned | Unassigned | Unassigned | Completed | Unassigned |
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| 4 | TCGA-E2-A15L | Right | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A15M | Right Lower Outer Quadrant | Unassigned | Unassigned |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1B1 | Left Upper Outer Quadrant | Unassigned | Unassigned |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1B5 | Left | Unassigned | Unassigned |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1B6 | Left | Unassigned | Unassigned |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1IE | Right | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1IG | Right Upper Inner Quadrant | Unassigned | Unassigned |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1II | Left | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1IJ | Right Upper Outer Quadrant | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 4 | TCGA-E2-A1IK | Left | Unassigned | Unassigned | Completed |
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Completed | Unassigned | Unassigned | Unassigned | 5 | TCGA-E2-A1IN | Right | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Unassigned | Unassigned |
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Completed | 5 | TCGA-E2-A1IP | Left Upper Outer Quadrant | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Unassigned | Unassigned |
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Completed | 5 | TCGA-E2-A1L7 | Right Upper Outer Quadrant | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Unassigned | Unassigned |
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Completed | 5 | TCGA-E2-A1L9 | Right | Unassigned | Unassigned | Unassigned | Unassigned | Completed | Unassigned | Unassigned |
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Completed | 5 | TCGA-E2-A1LG | Left Upper Outer Quadrant | Unassigned | Unassigned | Unassigned | Unassigned |
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Completed | Unassigned | Unassigned |
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TCGA-AR-A1AN
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Right Upper Outer Quadrant
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Completed
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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5
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TCGA-AR-A1AQ
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Left Upper Inner Quadrant
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Completed
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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5
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TCGA-AR-A1AX
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Left Upper Inner Quadrant,
Left Upper Outer Quadrant
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
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Unassigned
ClearCanvas sign-on
Name | User name | Role In Clinical Trial | Number within role in clinical trial |
Elizabeth Morris | emorris | Performing | 1 |
Margarita Zuley | mzuley | Performing | 2 |
Gary Whitman | gwhitman | Performing | 3 |
Ermelinda Bonaccio | ebonaccio | Performing | 4 |
Valencia King | vking | Performing | 5 |
Basak Dogan | bdogan | Performing | 6 |
Marie Ganott | mganott | Performing | 7 |
Elizabeth Sutton | esutton | Performing | 8 |
Jose Net | jnet | Performing | 9 |
Elizabeth Burnside | eburnside | Performing | 10 |
Kathy Brandt | kbrandt | Performing | 11 |
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